Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00520 ATGAATAAGATGAGCAATTTGAGCTCTGTGAGCAGCTCTGATCTCATAGATGCAAAGCTGGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGACGGGAAGCCGGACTGGTTAGGTCTGCCAGCAGGTGTCAAGTTCGATCCAACCGACCAAGAACTAATAGAACACCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATCCCTACCATTGAAGGAGAAGATGGGATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACGAGAGATGGCTTGAGTAGGCACTTCTTCCATAGACCTTCCAAGGCTTACACAACTGGgacaagaaagagaagaaaaattcaaaacgaATGTGACTTGCAAGGTGGAGAAACCCGATGGCATAAAACTGGTAAGACCAGGCCTGTAATGGTGAATGGCAAACAAAAAGGGTGCAAGAAAATTCTAGTCCTCTACACCAATTTTGGGAAGAATAGAAAACCCGAGAAAACCAACTGGGTCATGCACCAATACCATCTTGGGCAGCAtgaagaggagaaagaaggaGAGCTCGTGGTGTCGAAGATATTCTATCAGACACAGCCAAGGCAATGCAACTGGTCAGATAGAAGTGCAACCACAGGTGAAGGTAGCGGAGAACCCAACAGCAGAAGAGACAGTGGAAGTGGAAGTTGCTCTTCTAAGGAAATAGTTACTCACAGAGATGAGATGTCTGCAGTTGGTGTTCCTCAAATTTCAAGTTACACTGCTTTGGATATTCATCAACAGCTAAAATCAGACCATTTTAGCTTCATCCCATTCAGAAAAAGCTTCGATGAGGTCGGAGTAGGAGAGGCCTCTACAGCAAGAGATCAGATGCAAGCATCTGGATCATGTGAAGAGGTAGTCCATGAGAGGCAGCGAACACATCATCATGTGGCTCATcaacagcaacagcaacagcaacatCATCAGCATGTACATCATCAGATGGCAAACACGGCCTTCCATATCAGCAGGCCTTCACATCCAATCTCTACCATTAtctctcctcctcctcttcaCCACACCTCTATCATCCTCGACGATAGCTCTTACCATCACGTCTCCAGAATAATgctgcaaaatgaaaattttcagcaacagcagcagcaacatcaTAAACTAGGAGCAAGGTCTGCGTCTGGGTTGGAGGAACTCATCATGGGTTGCACTTCAACTGATATTAAAGAGGAATCATCCATTACAAATCCGCAAGAAGCTGAGTGGTTGAAGTACTCTTCTTACTGGCCTGACCCTGACAACCCGGATCATCATGGcta 1349 0.4144 MNKMSNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFDGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNSRRDSGSGSCSSKEIVTHRDEMSAVGVPQISSYTALDIHQQLKSDHFSFIPFRKSFDEVGVGEASTARDQMQASGSCEEVVHERQRTHHHVAHQQQQQQQHHQHVHHQMANTAFHISRPSHPISTIISPPPLHHTSIILDDSSYHHVSRIMLQNENFQQQQQQHHKLGARSASGLEELIMGCTSTDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00520 449 MobiDBLite consensus disorder prediction 216 250 - -
Bva03g00520 449 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Bva03g00520 449 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 6 440 - -
Bva03g00520 449 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Bva03g00520 449 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 6 440 IPR044799 GO:0003700
Bva03g00520 449 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Bva03g00520 449 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Bva03g00520 449 MobiDBLite consensus disorder prediction 216 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00520 Bva-Chr3 3024138 3028873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00520 11 446 NAC Transcription Factor Family AT5G56620 53.145 1.10e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva03g00520 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00520 - - gmx:100795246 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00520 03 3024138 3028873 Bva03g00520 03 3024138 3028873 BWGD
Bva03g00520 03 3024138 3028873 Bva03g00520 03 3024138 3028873 ECH