Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00514 ATGATGCTCGGAGAAACCCATCGCCCAAATCCAACGGTTCACGTTCCTCCGTGGTCGGTGCTTGACGATCAGACGCTGGAGATGTACTCCACTTACCCTGTCAGCGGTGTCTCCGTCAACTCCGACTGCAATGCCAACGGTGGCGATTATTCTCCCTATTACATGAACGACGCACTGACTTCGCTTCAGCGTTTTCTGCCGTCAAATGAAACGGATATGGACTCGGATTCTGAGATTCTGGGTCGTGAGTCGGATGCCCCGCTGGATGCCTACTCCTGCGACCATTTCCGGATGTTCGAGTTTAAAGTGAGGAAGTGCGCACGTGGCAGGTCGCATGACTGGACCGAGTGTCCTTATGCTCATCCCGGCGAGAAGGCTCGCCGGCGGGACCCCAGGAAGTACCACTATTCTGGTTCTGCATGCCCTGATTTTCGCAAGGGGAATTGCAAGAAAGGGGATGCATGTGAGTTCGCCCACGGGGTATTTGAGTGTTGGCTTCACCCGGCTCGTTATCGTACCCAGCCATGCAAGGATGGTACTAGTTGCCGGAGAAGGGTGTGTTTCTTTGCTCACACGCCGGAGCAACTGCGAGTGCTGCCTCAGCAGAGTCCCCGGAGTGTTAACTCGCCAGATTCTTATGATGGATCCCCTTTAAGACAGGCGATTGAGTCGTCTTGTGTGAAAACGCTGCCTTTCATGTCCTCTCCCCACTCAATTACCCCACCATCGTCGCCTCCGACCGAGTCGCCTCCTATGTCGCCGATGACACAGTCTGTGAGCCGGTCTCTGGGTTCGAGTTCCATCAACGAGATGGTGGCTTCTCTTCGTAATTTGCAGCTTGGCAAGGTTAAATCGTTTCCCTCGTACCGGAATGTTCAACTAGGATCGCCGTGTTTTGGATCTCCCAGAGGATCGGTGCTCCGACCCGGATTCTGCAGCCTACCTTCCACCCCTACTCAGGTACCTAGTCGTTCTGGTATGAGCTGCTTTGACATATGGGAGGAAAGTTGTGCGGAGGAGCCTGCGATGGAGAGGGTGGAGTCCGGAAGGGATATTCGTGCGAGGATGTTTGAAAAATTGAGCAAGGAGAACACTCTGGATCGACCGGACCCGAATTCAAATGGTGCTCCGGATGTTGGGTGGGTTTCGGAGCTGTTGAAATG 1163 0.5417 MMLGETHRPNPTVHVPPWSVLDDQTLEMYSTYPVSGVSVNSDCNANGGDYSPYYMNDALTSLQRFLPSNETDMDSDSEILGRESDAPLDAYSCDHFRMFEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSVNSPDSYDGSPLRQAIESSCVKTLPFMSSPHSITPPSSPPTESPPMSPMTQSVSRSLGSSSINEMVASLRNLQLGKVKSFPSYRNVQLGSPCFGSPRGSVLRPGFCSLPSTPTQVPSRSGMSCFDIWEESCAEEPAMERVESGRDIRARMFEKLSKENTLDRPDPNSNGAPDVGWVSELLK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00514 387 PANTHER UNKEMPT FAMILY MEMBER 7 386 IPR045234 -
Bva03g00514 387 MobiDBLite consensus disorder prediction 235 261 - -
Bva03g00514 387 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Bva03g00514 387 SMART c3hfinal6 135 161 IPR000571 GO:0046872
Bva03g00514 387 MobiDBLite consensus disorder prediction 361 387 - -
Bva03g00514 387 MobiDBLite consensus disorder prediction 238 252 - -
Bva03g00514 387 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Bva03g00514 387 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 160 IPR000571 GO:0046872
Bva03g00514 387 Gene3D - 134 199 - -
Bva03g00514 387 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00514 Bva-Chr3 2971585 2973352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00514 91 245 C2H2 Transcription Factor Family AT5G12850 57.962 2.67e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva03g00514 zf-CCCH 3.9e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00514 03 2971585 2973352 Bva03g00514 03 2971585 2973352 ECH