Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00513 ATGGGAAGAGCTCCATGTTGTGATAAAGCTTATGTGAAAAGAGGGCCATGGTCTCCTGAAGAAGATGCAACCCTTAAAAGCTACCTCGAGAAACATGGCACTGGTGGCAATTGGATTACCCTCCCCCAAAAAGCAGGACTTAGGCGTTGTGGGAAGAGCTGCCGCCTGAGATGGCTCAACTATCTCAGGCCACATATCAAGCATGGAGGTTTTACTGACGAGGAAGACAAGATCATCTGCACTGTTTATTCTACCGTTGGAAGTAGGTGGTCTCTGATAGCTGCACAGTTACCAGGAAGAACGGACAATGACATCAAAAACCACTGGAATACCAGGTTGAAGAAGAAGTTTTTGGCAGGAGCGAACACTAAATGTCTAAACAACGTTGACACCATTAACAAGGATGTTAATAATGGTTATATCCCTAGACCTCAAGATGAAGCCGACTCTTATCAGTACAGTAACTCAACATCAACTGCTTGTCTTCAAGACTGCCATGTTCTAGACTTGGAGCCCGCAACAACTAAAATGCCTACGGAAATGCAAGTTTCAATCTTTGACAGTAGCGTGATGAGTTACAGTTGCAGTTCTAAGGAggtttcaaatatttcaacttCATCAGCAGAAACATCCTTGGCAGAGGAGAACCATCATACCAAATGGCTGGATCAAGATGAGGCAATTTTGCTTGATTTTGTGTATGATCTCCTgaataattg 719 0.4242 MGRAPCCDKAYVKRGPWSPEEDATLKSYLEKHGTGGNWITLPQKAGLRRCGKSCRLRWLNYLRPHIKHGGFTDEEDKIICTVYSTVGSRWSLIAAQLPGRTDNDIKNHWNTRLKKKFLAGANTKCLNNVDTINKDVNNGYIPRPQDEADSYQYSNSTSTACLQDCHVLDLEPATTKMPTEMQVSIFDSSVMSYSCSSKEVSNISTSSAETSLAEENHHTKWLDQDEAILLDFVYDLLNN 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00513 239 CDD SANT 71 113 IPR001005 -
Bva03g00513 239 CDD SANT 16 62 IPR001005 -
Bva03g00513 239 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bva03g00513 239 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bva03g00513 239 PANTHER OS09G0431300 PROTEIN 1 211 - -
Bva03g00513 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 62 IPR017930 -
Bva03g00513 239 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bva03g00513 239 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva03g00513 239 Gene3D - 70 138 - -
Bva03g00513 239 PANTHER OS09G0431300 PROTEIN 1 211 - -
Bva03g00513 239 SMART sant 13 64 IPR001005 -
Bva03g00513 239 SMART sant 67 115 IPR001005 -
Bva03g00513 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bva03g00513 239 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Bva03g00513 239 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00513 Bva-Chr3 2965464 2966432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00513 1 118 MYB Transcription Factor Family AT5G65790 83.051 1.98e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva03g00513 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00513 K09422 - gmx:778160 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00513 03 2965464 2966432 Bva03g00513 03 2965464 2966432 ECH