Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00489 ATGGGAGTCCACGGTCTTTGGGAACTTCTGGCACCTGTCGGTCGCCGGGTTTCCGTTGAAACCCTTGCCGGAAAAAAGCTCGCCATTGATGCGAGCATATGGATGGTGCAATTTATGAAGGCGATGCGGGACGAGAAGGGCGAAACGATTCGCAATGCACATTTGCTTGGCTTCTTCCGTCGAATTTGCAAGCTTTTATTCCTGCGGACCAAGCCTGTTTTCGTCTTTGATGGTGGCACTCCTGCTCTCAAGCGGCGGACTGTGCTAGCACGTCGCAAGCAGCGGGAAATGGCTCAGGCGAAAGTTCGCAAAACTGCCGAGAAATTGCTCCTCAATCATTTGAAGgcattgaaattgaaagaacTGGCAGATGATATTAAGAACCAGAGACTGAAGCAGAAGACTGATACTAAGGGTCAGAAAAAATCAGATCAGAGTTATTTAGGAAGAACCGATGTGAAAGAGCTAGATGAGATaTCTGGAGAAAAATTTGCATCTGAGATGGGGAAAAATTTATCCCGGACAATTGCATCAAGAAGTTGTAATCAGGAGGAGCTTGATGAAATGTTGGCGGCATCTATGGTTGCAGAGGAAGATGGAACTTTGGCTGATATAGGAGTGGCATCTGCTGCTGTTAATCTTCCTGATGAGGAAGTTGATGCAAATGAAGATATGATGctgCCAATAGTTAATGCTGAAATTGATCCATCAGTATTTGCTGCTTTGCCGCATTCAATCCAATTTGATATTCTTGCTCAGTATAAAGGAAGGAAAACAGAAGAGCTGGTGAAGAACATCGATAACCACAAGCATGAGGTCAGTGATAAGGGGAAGGGAAAAGGAATTCTGTCAGAAATTGACATGGTAGGATGTAGCTCAAGAAATGATGATGCAATGATATCCGGGAATTACAATCAAGACAAAGTTGATGAAATGTTGGCCGCATCTATTGTGTCTGAGGAAAATGGAAATTTGGCAAATAGTGCACCAGCATCTGTTGGGGCTTATACCTTTGAGGAAGAGGATGGAAATTTTGATGAAGATGAGGAGATGATACTGCCAACAATGCATGGTGAAGTTGATCCAGCTGTTCTAGCTTCTTTGCCTCCATCAATGCAACTTGATCTTCTTGTTCAgATGAGAGAGCGGTTGATTGCAGAAAACAGACAGAAGTACCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACTAGCTTATCTTAAAACTGTTTCTTTCCGTCGGGAGATAGATCAAGTTCAGAAAACTGCTGCTGGGGGAGGAGAAGGTGGTGTACAGATTTCAAGGATCGCATCTGAAGCCAAcagagaatatattttttcatcatCTTTTACTGGAGACAAACAAGAACTTACCTCTAACAGATTAGAGAAAGACAAGGGTAAGCAGCAAACGATGCAGGCAAGAAATCCTTCACAGAGTTCTGTGAAGAGCAAAGCTCCAGCCAATGATTCTAATTCTCCAAGCAAATCAGTTAGTGATGAACCTGAAGGGCCTTTTGATGAGAGTATCCAGACATATCTGGATGAGAGGGGTCGGTTTCGAGTTAGTAGACTGAGAGCTATGGGGATGCATATGACCCGGGATATACAAAGGAATTTGGATATGATGAAGGAGATTGAGCAGGAGAGAAGAGATGTAAGCAAGGCTTCAAATATCAACGCATTGCTCCATGTAAAGAAAGATAAGAGTGCATCACGAATTTCTGGCAACCAGCTTGTTGGTGCATCACATGAAATAAATGTTGACTTTGTTGGAAAGCATACAGGAAATAAGCAATCTGTGTTGGAAAGTGATACATCTATAGAGATATCCTTCAAAGATGATGAGGAAATTAAGTGTCtcaatgatgatgatgatttttttgCTAGTTTAGTGGCAGATAATTCCAGTGCAGTATCAAAAGAACAACCTTCTGATCCTAATTCTGATAGTGATTGGGAGGAAGGAATTATTGAAGGTAAAAGTAACGTTTTTTCTGGTGATATTGGAGTTGAAATGGGGCCTTCTGTTGTAAAAGATGATAATTGTGACGAGAGTGAAATAGAATGGGAAGAAGGAGTTTCGGATGGTGCTAAAAGCACCTTATCCTGTCCGGTTGAGTCACATAAAGTGGCATCTCGGGGCTGCTTGGAAGAGGAGGCTGATTTGCAGGAGGCAATTAGGAGAAGTCTTGACAGTAATACAGATGGGGAACTTAACTTAAAATCTTCTCTTGATGAGCATTCAGATGCTGATGAGGGCAAATTTGATTATGCATTACAGCACGATGATAATTTGGTTGGTTCTGGAGTTAATGACTGTAATGATGACACTGAATTGCTGAATATAGAAAATGGTAAGGGTAGGTCCACTTTTCCAAGGGAAGTTGGTAATGAACGAAATGAATCACTTTATCAATTTGACGATGGAGATGAAAAGATAGATAATGTGACCAGTAATAACCCACAAACTTCTCATTCTACTGGGTCTCAGTCAAAGTTATCTCTGCCATATCATTCTGATAACTTGGAATTACCAACTAACAAGCCTTGCATGATAGACAAAGGTTCTCATTCTGAAGATTTGTTGTCTGATGCAAATGAAAGGATGAAGAATGAGGTCAATATGGTTGTAGAGCAAATCTTGGACACACGTGGTGAGGATGGTAAAGTTTCTACCAATTATAAGTCTCCTAATTTTAATTCCCTTGCTGCCACtgaagaggagaaaaagaattacaatAATGAAGCTGAACCTTTGGGTATTTCTACTGAAATAACCAGCACTGCTGCTCCTTTTGTGGAGTCATCATTGAAAGGATCAACTGGGGACCTTAACGCTTGGTCAAAGTTGCCTAGAAAGGACAATGATGGAAGTTTTGTGGAAAGGAAGAGTGACCTGGGCAATGGTACAGTTAAGGCCTATGGAGATTTGCCTGCAGGTGTAACTGAGGTTATTCTGGAGGAAGAAATGCGAAATCTTGATCAAGAATATATCAACTTAGAAAATGAGCATAGGAAGCTTGAACGTAATGCAGAATCTGTCAACAGTGAATTATTCACAGAATGTCAGGAACTACTACAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCACAGTGTGCTTATTTGGAACTTGCGAAACTGGTTGATGGTGTTGTGACTGATGACTCTGATGTCCTTTTATTTGGGGGGCGTAGTGTCTACAAGAATATATTTGATGACCGCAAATATGTAGAAACATACTTCGTGGAGGATGTTGAGAAGGAGCTTGGATTGACGAGAGAAAAATTGATACGCATGGCATTACTTTTGGGGAGTGATTACACTGAAGGTGTAAGTGGTATTGGCATTGTAAATGCTATTGAGGTTGTAAATGCGTTTCCTGAGGAAGATGGCCTCCTGAAATTCCGGCGGTGGGTTGAGTCACCAGATCCCACCATCCTTGGAATGTTTGATGCAAAAAGTGGATCGAGTACTAACAACAGGGGGtcaaaagttgaagaaaacaaagggtGCTCAAATAGCAACACTGAAGAGGCTGCATCTGACAAAAACATTTCCCAAGAGCAGGAGCAAAAGGAGTGTTCAGATTACATCCAAGAAATAAAGCAAACTTTCATGGATAAACATAGAAATGTAAGTAAGAATTGGCACATTCCTACTTCTTTTCCTAGTGAGACAGTTATATCTGCTTACCATTCTCCACAAGTTGACAAGTCAACTGAGCCTTTCACCTGGGGAAAGCCAGATCATCTTGTTCTTCGCAAATTGTgctgggagaagtttggatgGACCAGCCAGAAAGCAGATGAATTGCTATTACCTGTTTTAAAGGAATATAACAAACATGAGacTCAATTGCGGTTGGAAGCATTTTACACTTTCAATGAAAGATTTGCAAAAATTCGTAgcaagagaataaagaaagctATAAAAGGAATCACCGGTAATCAGACTTCAGAATTGATAGATGATTCTACGGAAGACTTGTCCAAGAGTATGAAGACTGGGAAAGGTAGTCCTGTTGGACCTGGTGAGAAGAAATCAGAGACTTCAAAGGGAATAGAGCAGAATCTTTCTGCCatgaataattcaaaattgaaacaGTCCGGGAAAAGGAAGAATGCTGGAGTTGCTGATGCTAAGGTGCAGTCAAGGAAAAAGGGAAACACAAGAAATCCTGGTTCAGTTCCTGGTCTGTCTGAGGTGGAGAATTTGGAACAGTATACACAGGCGGGAGAAGAGCAAAGTGATGGTAAGGCCTTGAGTTGGAATGGAAGTGGCAGAGGAAGAGGACGAGGTAGGGGTGTAGGAGTTgggagaggaaagaaaaagggaaatccTGGTTTTGAATCATGTGATACCACATCTACTGATAGTGAAAGTTATGATCATGAGCAGAGATTGAATGTTGAGAACTCAAAGGGGCTGCAACAGGTGAGAAGGTCAATGCGATCTCGGAAGCCTGTCACCTACTACATGAAGGACACTGAAATTGATGACAACGACTCGTTCGATCTAAGCAATAAGATATCTTTGAATGAAGAGGCAACTGAAGAAAATTTATCTTCCATTCATGGTGCATGTGGAGATGCTACCACTGATTTCTGCTTAGAGAAACAAAGCAGCATGAATAATGTTTCTCTGAAGGAGGATTCGTCTAAACCCCATCTTGAGTTGGGAGGTGGGTTTTGCGCTGATGAAAGTGAAACTAGTCATCCGGGAACCAGCAGCTATGATAATTTTAAGGTTGATTCTTCTACAGACTACCCTAAAATGGGAGGTGGATTCTGTGAAGATGACAGGGAGACGGAGAACAATTATGATAACATTCATGGTGACATTGCAGATACTGTGGATGAGGCTGAcaatgataaatataatatagatcAATCGGGTTCTGGCATAGACAGAGTTGGAAATGAACTACGAGATACAGGGACGGCTTGTACATACAATTTAGATCCGAATCGCAGCCATGTAGATGCCAGGAGTAATCATGATCATTTTGACGTAAGTGTCTTGACGCCGGAGAATGCTCATAACAATACTGAAAGTTCCACGGGAGGACTCAGTGCCATGCCCTTTCTGAGAAAAAAGAGGAGGAAAAGCTG 5141 0.4011 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFMKAMRDEKGETIRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVLARRKQREMAQAKVRKTAEKLLLNHLKALKLKELADDIKNQRLKQKTDTKGQKKSDQSYLGRTDVKELDEISGEKFASEMGKNLSRTIASRSCNQEELDEMLAASMVAEEDGTLADIGVASAAVNLPDEEVDANEDMMLPIVNAEIDPSVFAALPHSIQFDILAQYKGRKTEELVKNIDNHKHEVSDKGKGKGILSEIDMVGCSSRNDDAMISGNYNQDKVDEMLAASIVSEENGNLANSAPASVGAYTFEEEDGNFDEDEEMILPTMHGEVDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQILAYLKTVSFRREIDQVQKTAAGGGEGGVQISRIASEANREYIFSSSFTGDKQELTSNRLEKDKGKQQTMQARNPSQSSVKSKAPANDSNSPSKSVSDEPEGPFDESIQTYLDERGRFRVSRLRAMGMHMTRDIQRNLDMMKEIEQERRDVSKASNINALLHVKKDKSASRISGNQLVGASHEINVDFVGKHTGNKQSVLESDTSIEISFKDDEEIKCLNDDDDFFASLVADNSSAVSKEQPSDPNSDSDWEEGIIEGKSNVFSGDIGVEMGPSVVKDDNCDESEIEWEEGVSDGAKSTLSCPVESHKVASRGCLEEEADLQEAIRRSLDSNTDGELNLKSSLDEHSDADEGKFDYALQHDDNLVGSGVNDCNDDTELLNIENGKGRSTFPREVGNERNESLYQFDDGDEKIDNVTSNNPQTSHSTGSQSKLSLPYHSDNLELPTNKPCMIDKGSHSEDLLSDANERMKNEVNMVVEQILDTRGEDGKVSTNYKSPNFNSLAATEEEKKNYNNEAEPLGISTEITSTAAPFVESSLKGSTGDLNAWSKLPRKDNDGSFVERKSDLGNGTVKAYGDLPAGVTEVILEEEMRNLDQEYINLENEHRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVLLFGGRSVYKNIFDDRKYVETYFVEDVEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRRWVESPDPTILGMFDAKSGSSTNNRGSKVEENKGCSNSNTEEAASDKNISQEQEQKECSDYIQEIKQTFMDKHRNVSKNWHIPTSFPSETVISAYHSPQVDKSTEPFTWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKHETQLRLEAFYTFNERFAKIRSKRIKKAIKGITGNQTSELIDDSTEDLSKSMKTGKGSPVGPGEKKSETSKGIEQNLSAMNNSKLKQSGKRKNAGVADAKVQSRKKGNTRNPGSVPGLSEVENLEQYTQAGEEQSDGKALSWNGSGRGRGRGRGVGVGRGKKKGNPGFESCDTTSTDSESYDHEQRLNVENSKGLQQSMRSRKPVTYYMKDTEIDDNDSFDLSNKISLNEEATEENLSSIHGACGDATTDFCLEKQSSMNNVSLKEDSSKPHLELGGGFCADESETSHPGTSSYDNFKVDSSTDYPKMGGGFCEDDRETENNYDNIHGDIADTVDEADNDKYNIDQSGSGIDRVGNELRDTGTACTYNLDPNRSHVDARSNHDHFDVSVLTPENAHNNTESSTGGLSAMPFLRKKRRKS 1710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00489 1710 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Bva03g00489 1710 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Bva03g00489 1710 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1331 1492 - -
Bva03g00489 1710 SMART HhH_4 1103 1136 IPR008918 GO:0003677|GO:0003824
Bva03g00489 1710 Coils Coil 988 1022 - -
Bva03g00489 1710 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Bva03g00489 1710 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Bva03g00489 1710 Pfam XPG I-region 1035 1116 IPR006086 GO:0004518
Bva03g00489 1710 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 261 - -
Bva03g00489 1710 SMART xpgineu 1032 1101 IPR006086 GO:0004518
Bva03g00489 1710 MobiDBLite consensus disorder prediction 459 516 - -
Bva03g00489 1710 CDD H3TH_XPG 1104 1248 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1363 1380 - -
Bva03g00489 1710 Gene3D - 222 260 - -
Bva03g00489 1710 CDD PIN_XPG_RAD2 1009 1102 - -
Bva03g00489 1710 CDD PIN_XPG_RAD2 2 99 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1682 1697 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 475 503 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1159 1202 - -
Bva03g00489 1710 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 258 1709 - -
Bva03g00489 1710 SMART xpgn3 1 98 IPR006085 GO:0004518
Bva03g00489 1710 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 258 1709 - -
Bva03g00489 1710 Pfam XPG N-terminal domain 1 96 IPR006085 GO:0004518
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1566 1591 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1161 1192 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 639 659 - -
Bva03g00489 1710 Pfam Ubiquitin binding region 359 384 IPR025527 -
Bva03g00489 1710 Pfam Ubiquitin binding region 229 253 IPR025527 -
Bva03g00489 1710 Gene3D - 1 149 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 810 840 - -
Bva03g00489 1710 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Bva03g00489 1710 SUPERFAMILY PIN domain-like 2 1116 IPR029060 -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1676 1710 - -
Bva03g00489 1710 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 261 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1382 1396 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1576 1591 - -
Bva03g00489 1710 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1101 1310 IPR036279 -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 1397 1432 - -
Bva03g00489 1710 ProSitePatterns XPG protein signature 2. 1035 1049 IPR019974 GO:0016788
Bva03g00489 1710 Gene3D - 1101 1159 - -
Bva03g00489 1710 Gene3D - 987 1100 - -
Bva03g00489 1710 MobiDBLite consensus disorder prediction 820 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00489 Bva-Chr3 2829741 2839984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00489 1026 1133 Core DNA Replication Machinery Family AT5G26680 36.036 8.93e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00489 K10846 - gmx:100820295 1858.57