Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00487 ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGCCACAATTCTAGGACTTGTACATCTTTCAGAAGCACTTTTGTTGGACTGAGGCTTTTCGGTGTGCAACTAGATTTATCCTCATCTTCTGTTGCCATGAAGAAAAGCTTTAGCATGGATTCTttgtcttcatcttcttctccatCTTCCTCATTTTCTTCGTCAAGATTAACAATTGATGAAAATTCTGACAAAGCTTCTATTGCCTATCTATCAGATGGTCTTATAGGTCGAGTAcaagagaggaagaaagGAGTTCCATGGACAGAAGAAGAGCACAGAACATTCCTTATTGGACTTGAGAAGCTGGCGAAAGGTGACTGGAGAGGCATCTCTAGAAACTATGTGACTACGAGGACCCCAACCCAGGTTGCAAGCCATGCTCAGAAGTATTTTCTTCGATTGGCAACGATTAATAAGAAGAAACGACGTTCGAGTCTTTTTGATATGGTTGGCAACAAAAGCTGCAACGCCAACACAGCTGGTAATCCAATCAGTAGCTGTAATAATTCCAAGGCTTCAGATTCGGTTCGGGTTAAATCAGGAAGCTCCAAATGTGAAGTTCAGAATGATACCACTTTGGCAGTGTTAACCCTTGCCACTTCcttcaaacaagaaattaacaaatcaGATAAGCAAGAAACTGCTCATTCTCAACAGCAAGCTTCAGACCATGGTGGTGTGCCAATCTGGCTATATTCTCAAATGAAATCTTCAAATGTGGGAAAACCCAGTTCCCCAAATGCAGCACCTGATCTGGAACTCACCCTTGCAGCCCCAAAGACCATGGAACAAAAAAGATCATCTCCTGGTCAATACCTGCTTGGGCCAATTAGTGTGACATa 878 0.3998 MGRKCSHCGNIGHNSRTCTSFRSTFVGLRLFGVQLDLSSSSVAMKKSFSMDSLSSSSSPSSSFSSSRLTIDENSDKASIAYLSDGLIGRVQERKKGVPWTEEEHRTFLIGLEKLAKGDWRGISRNYVTTRTPTQVASHAQKYFLRLATINKKKRRSSLFDMVGNKSCNANTAGNPISSCNNSKASDSVRVKSGSSKCEVQNDTTLAVLTLATSFKQEINKSDKQETAHSQQQASDHGGVPIWLYSQMKSSNVGKPSSPNAAPDLELTLAAPKTMEQKRSSPGQYLLGPISVT 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00487 292 SMART sant 95 145 IPR001005 -
Bva03g00487 292 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Bva03g00487 292 MobiDBLite consensus disorder prediction 249 292 - -
Bva03g00487 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Bva03g00487 292 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 290 - -
Bva03g00487 292 MobiDBLite consensus disorder prediction 219 238 - -
Bva03g00487 292 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Bva03g00487 292 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Bva03g00487 292 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Bva03g00487 292 CDD SANT 98 143 IPR001005 -
Bva03g00487 292 MobiDBLite consensus disorder prediction 273 292 - -
Bva03g00487 292 SUPERFAMILY Homeodomain-like 92 147 IPR009057 -
Bva03g00487 292 Gene3D - 97 150 - -
Bva03g00487 292 PANTHER TRANSCRIPTION FACTOR KUA1 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00487 Bva-Chr3 2807987 2809692 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva03g00487 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00487 - - qlo:115976132 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00487 03 2807987 2809692 Bva03g00487 03 2807987 2809692 ECH