Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00486 ATGGTAGCCGGGGGTGTGTCCTCCGCCATCCCCTCAACCAGGATAAAAAGGGAAGATTGTAAGCGCACAAAACATGATTCCAGCTTCTCTGATTGGAAGATTCTCATCGGCCCTTGTGATTGGGAAGATTATTCTAAAGGAAAGGAGGGATCGGCAAGATACAGAATTCATAATCTCCCTGAGAAATCCAGTGCAGGAGTATATGAGCTTGGTATAGCAGTAACTCATAGTCGTTCAGGGCGCAAAATTAAAGACCTCGCCCCAGATGAAATAGTTGTGGTGTATCTTGGACAAGCTGACAATGTCAGAACACGGCTCCAGAGTTATGGCCGAACTGGAGCCCATTTGGGCAATACCTGCTCAGCTCATGATCCACACGATTGCAATCATGCTTCTCTGCAAAAGGGGAGCCAACTGTTTGAGCAGATATTTTCACAAGGCTATCCAATTATTTATAGATGGGCTTCTATGCAAAGCAAGGAAGATGCCAAGCAAACAGAAGATCAGCTACTCAATGTATTTGATTATGCATGGAACACAATCAATAACGGTACAAGACGGCCTAATGATATCCttcaaaaacttaataaaattgcTTCAGATACTAGAAGATTTTCAGATATGGTCAAGAAGTTTATACCATTCACTCAGAAGCAAGTGGGTATTAGAATTAAATCAAGCATGCATCCATCAGATGAAAAATTGTGTGAAGCAGAAGAAGACAGATATCATTTCTTATCTCGAGTATTCAAATTTAACAGATCACGTCCTAGGATAGTTGAGGATATCACCGATGTTATTCAGGAGAATGCTAAAATTTGTGGAGTGGCTTTGGATGATGGTTCTATTCGTACAAGACCACCAGCTGAAAGAAGAATGAGGTGTCGTGAACACAAAGGTATGAGAATAAATGGGTCCATTGCAAAGCCAGAAAGCATGGTGATCTTAAAATCAAATGCATATTTTCAGAGAGAGGGTGATGGCCATGGTGTGGAAGAGAGTCCAAAAACACAGGAAACAGTTCTTGAGAGCTTTACCATTTTATGTGGAATCATCTTGGATGACGGCTCCCCTTGTAGAAAAGAACCAGTTAAAGGGAGAAAAAGGTGTGTTGAGCACAAAGGGAAGAGAGTGCAAGCTCAGACATCTGTCTATAAATCAGTAGTTGCtggaaattcaaaatttctgaATAATGCGGTCTCAGAATCTAATGCTCTCAACGCTAACTCCATGCAAAAGACAAGTGCTATGTATAAACTAGATAAAGTACAAGGTCAAAGTCCTTTTTCAAGCAAACTATGTGGGGTGAATTTAGGCGATGGATTTTGCTGTACAAGGGAACCTGTTAGAGGACGGGTAAGGTGCGAGGAGCATAAAGGGATGAGGGTTAGCAAGCTCATTTCTAGGACAATAGCAGAAGACGAGAAGTACATGTCTGATATGAATTCACATATCAAAAGTTG 1463 0.406 MVAGGVSSAIPSTRIKREDCKRTKHDSSFSDWKILIGPCDWEDYSKGKEGSARYRIHNLPEKSSAGVYELGIAVTHSRSGRKIKDLAPDEIVVVYLGQADNVRTRLQSYGRTGAHLGNTCSAHDPHDCNHASLQKGSQLFEQIFSQGYPIIYRWASMQSKEDAKQTEDQLLNVFDYAWNTINNGTRRPNDILQKLNKIASDTRRFSDMVKKFIPFTQKQVGIRIKSSMHPSDEKLCEAEEDRYHFLSRVFKFNRSRPRIVEDITDVIQENAKICGVALDDGSIRTRPPAERRMRCREHKGMRINGSIAKPESMVILKSNAYFQREGDGHGVEESPKTQETVLESFTILCGIILDDGSPCRKEPVKGRKRCVEHKGKRVQAQTSVYKSVVAGNSKFLNNAVSESNALNANSMQKTSAMYKLDKVQGQSPFSSKLCGVNLGDGFCCTREPVRGRVRCEEHKGMRVSKLISRTIAEDEKYMSDMNSHIKS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00486 487 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 11 474 IPR038909 GO:0003677|GO:0006355
Bva03g00486 487 Pfam GIY-YIG domain-containing protein 29 192 - -
Bva03g00486 487 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 11 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00486 Bva-Chr3 2789815 2792748 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00486 347 487 HRT Transcription Factor Family AT5G56780 33.987 3.78e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Bva03g00486 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00486 - - qsu:112018326 488.804