Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00483 ATGGCAGAACCCGTAATGGTAGGCGGGGGGGTGTCCTCCGCCATCCCCTCAACCAGGATAAAAAGGGAAGAGTGTAAGCGGACAAAACATGATTCCAGCTTCTCTGATTGGAAGATTCTCATCGGCCCTTGTGATTGGGAAGATTATTCTAAAGGAAAGGAGGGATCGGCAAGATACAGAATTCATAATCTCCCTGAGAAATCCAGTGCAGGAGTATATGAGCTTGGTATAGCAGTAACTCATAGTCGTTCAGGGCGCAAAATTAAAGACCTCGCCCCAGATGAAATAGTTGTGGTGTATCTTGGACAAGCTGACAATGTCAGAACACGGCTCCAGAGTTATGGCCGAACTGGAGCCCATTTGGGCAGTACCTGCTCAGCTCATGATCCACACGATTGCAATCATGCTTCTCCGCAAAAGGGGAGCCAATTTTTTGAGCAGATATTTTCACAAGGCTATCCAATTTTTTATAGATGGGCTTCTATGCAAAGCAAGGAAGGTGCCAAGCAAACAGAAGATTGGCTACTGAATGTATTTGATTATCCATGGAACACAATCAATAACGGTACAAGACGGCCTAATGATATCCTTCAAAAACTTAACAAAAGTGCTTCAGATACTAGAAGATTTTCAGATATACCATTCACTCAGAAGCAAGTGGGTATTAGAATTAAATCAAGCATGCATCCATCAGATGAAAAATTGTGTGAAGCAGAAGAAGACagatataatttcttatctCGAGTAATCAAATTTAACGGATCACGTCCTAGGATAGTTGAGGATATCACTGGTGTTATTCGGGAGAATGCTAAAATTTGTGGAGTGGCTTTGGGTGATGGTTCTGTTTGTACAAGACCACCAGCTGAAAGAAGAATGAGGTGTTGTGAACACAAAGGCATGAGAATAAATGGGTCCAATGCAAAGCCAGAAAGCATGGTGATCTTAAAATCAAATGTTGACCATGGTGTGGAAGAGAGTCcaaaaacacaagaaagaGTTATTGAGAGCTTTACCATTATATGTGGAATCATCTTGGATGACGGCTCCCCTTGTAGAAAAGAACCAGTTAAAGGGAGAAAAAGGTGTGTTGAGCACAAAGGGGAGAGAGTTCAAGCTCAGACATCTGTCCATAAATCAGTAGTTGCtggaaattcaaaatttcggAATAATGTGGTCTCAGAATCTAATGCTCGCAACGCTAGCTCCATGCAAAAGACAAGTGCTATGTATAAACTAGATAAAGTACAAGGTCAAAGTCCTTTTTCAAGCAAAATATGTGGGGTGAATTTACGCAATGGATTTTGCTGTACGAGGGAACCTGTTAGAGGACGGGTAAGGTGCGAGGAGCATAAAGGGATGAGGGTTAGCAAAGCTCATTTCTA 1385 0.4101 MAEPVMVGGGVSSAIPSTRIKREECKRTKHDSSFSDWKILIGPCDWEDYSKGKEGSARYRIHNLPEKSSAGVYELGIAVTHSRSGRKIKDLAPDEIVVVYLGQADNVRTRLQSYGRTGAHLGSTCSAHDPHDCNHASPQKGSQFFEQIFSQGYPIFYRWASMQSKEGAKQTEDWLLNVFDYPWNTINNGTRRPNDILQKLNKSASDTRRFSDIPFTQKQVGIRIKSSMHPSDEKLCEAEEDRYNFLSRVIKFNGSRPRIVEDITGVIRENAKICGVALGDGSVCTRPPAERRMRCCEHKGMRINGSNAKPESMVILKSNVDHGVEESPKTQERVIESFTIICGIILDDGSPCRKEPVKGRKRCVEHKGERVQAQTSVHKSVVAGNSKFRNNVVSESNARNASSMQKTSAMYKLDKVQGQSPFSSKICGVNLRNGFCCTREPVRGRVRCEEHKGMRVSKAHF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00483 461 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 15 459 - -
Bva03g00483 461 Pfam GIY-YIG domain-containing protein 34 197 - -
Bva03g00483 461 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 15 459 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00483 Bva-Chr3 2780532 2783220 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00483 412 459 HRT Transcription Factor Family AT5G56780 50.000 8.14e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Bva03g00483 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00483 - - qsu:112018326 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00483 03 2780532 2783220 Bva03g00483 03 2780532 2783220 ECH