Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00474 ATGGAGTCCAGCCGTCTTTTCTTTAACCCGTCCGCTAGCCACGGGAACATGCTTTTCCTCGGGAATGGTGATTCCGTTTTCGGAGGAAGATCGGTGATGGGCATGGAGGAAACCTCAAAGAGGAGACCTTTCTTCAGCTCACCAGAGGAATTGTTCGACGAGGAATATTACGGCGAGCAGTTTCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCTTCTGTTGGAGAAGAGCTTTGAGGCAGATAACAAACTGGAGCCTGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGATTGCAGCCAAGGCAGGTGGCTGTGTGGTTTCAGAACCGCCGGGCTCGGTGGAAGAACAAGCAACTTGAAATGGATTATGATCTTCTCAAGTCTTCCTACGATTCCCTTCTGTCAAAGTATGAATCTGTTGCGAAGGAGAATGAAAAGCTCAAAGCTGAGGTGGTATCATTGAATGAGAAGCTTAAAGCTGAAGACATGTCCGGAAAACCAGTATCAGATGAAAAAACTGCGCCAGTTGCGGTTGATATGGTCCAAATTCCGGCCCTGCCATTCAACACGAAGGTGGAGGATCGCCTGAGCTCTGGGAGTGGTGGAAGTGCGGTGGTGGACGAGGATAGCCGGCAGCTGGTTGTGGACAGCGTCGATTCATACTTTGCTGCTGATAATTATGCTGATGCTGGATGCCATCTAGCCAGAGGTGATAGAATTCAGTCGGAGGAGGATGATGGCAGTGATGATGGCCGGAGTTACTTCTCGGATGTGTTTGTGGCTGAACCCCAAAACCATGAGGATGGTGAGACATTGAATTGGTGGGTTTGGTCTTA 842 0.5048 MESSRLFFNPSASHGNMLFLGNGDSVFGGRSVMGMEETSKRRPFFSSPEELFDEEYYGEQFPEKKRRLTSEQVLLLEKSFEADNKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKNKQLEMDYDLLKSSYDSLLSKYESVAKENEKLKAEVVSLNEKLKAEDMSGKPVSDEKTAPVAVDMVQIPALPFNTKVEDRLSSGSGGSAVVDEDSRQLVVDSVDSYFAADNYADAGCHLARGDRIQSEEDDGSDDGRSYFSDVFVAEPQNHEDGETLNWWVWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00474 280 Coils Coil 132 166 - -
Bva03g00474 280 SMART HOX_1 62 123 IPR001356 GO:0003677
Bva03g00474 280 CDD homeodomain 64 120 IPR001356 GO:0003677
Bva03g00474 280 Pfam Homeobox associated leucine zipper 119 160 IPR003106 GO:0006355|GO:0043565
Bva03g00474 280 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Bva03g00474 280 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Bva03g00474 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 264 IPR045224 GO:0003700
Bva03g00474 280 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Bva03g00474 280 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Bva03g00474 280 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Bva03g00474 280 SUPERFAMILY Homeodomain-like 64 130 IPR009057 -
Bva03g00474 280 Gene3D - 57 124 - -
Bva03g00474 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00474 Bva-Chr3 2748281 2751041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00474 1 279 Homeobox Transcription Factor Family AT3G01470 57.586 6.99e-97 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva03g00474 Homeodomain 5.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00474 K09338 - jre:108992866 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00474 03 2748281 2751041 Bva03g00474 03 2748281 2751041 ECH