Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00439 ATGGCCGCAACTGCAACTGCCTCTTCCGTGGGTCCACGTTATGCCCCTCCGGACCCAACACTTCCAAAACCATGGCGAGGACTTGTTGATGGTAAGACGGGGTACCTTTACTTTTGGAATCCTGAGACTAATGTCACCCAATATGAGAGACCTACGAGCTCAGCTCCCCCGCAAAAGTCTTCTTCAGTGCCAAGCTCTTCTGTCCAGGTTCAGCAATCAGCTCAAGGAGTGCAACGTGGCCGCAGTCCTGATTTGAGTGATAGGTATGATAGGAACAACAGTGGTGGATCAAACCTTGAAGCTGGATCACGAAACCATCAGaATGCAAAAGGTGGAAGTTTTAATTCTCATAATGTTCCAAGTGGGACACATGTTCCTGGAAATGTTGGTTCTACTAGAGGTGCTGGAACATCAGATGCAGGAGCTGGATTATCTCCAGAGGCATATCGTCGTCGGCATGAAATAACTGTTACTGGGGATAACGTGCTTCCTCCTTTTACATCTTTTGGGTCCACTGGCTTTCCATCTGAGATTCTCAGAGAGgTACACAATGCTGGGTTCTCTGCCCCAACTCCAATCCAGGCACAGTCATGGCCCATTGCTCTCCAAAGTAGAGATATAGTTGCCATTGCTAAAACAGGTTCAGGTAAAACCTTGGGATATTTAATCCCTGGATTTATTCACCTCAAGCGCTGTGGTAATGACTCCAAATTGGGTCCCACTGTGTTGGTGTTGTCACCAACAAGGGAGTTGGCAACACAAATACAAGATGAAGCTGTGAAGTTTGGGAAGTCTTCAAGAATTTCTTGTGTGTGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGAGGAGCAGATATTGTGGTTGCCACTCCTGGCCGTCTGAATGATATTCTTGAGATGAGGAGAATCAGCCTTCATCAGGTATCTTACCTTGTGCTAGATGAGGCTGACCGGATGCTGGATATGGGTTTTGAACCTCAAATTAGAAAGGTTGTGAAAGAGGTGCCTGCTCGTCGGCAAACCCTCATGTTCACTGCAACATGGCCAAAGGAGGTCAGGAAAATTGCAGCTGATCTACTGGTTAACCCTGTCCAGGTTAACATTGGCGACGTTGATGAACTTGTTGCTAATAAGTCCATCACTCAGCATGTTGAAGTGTTACCACCACTGGAGAAACACAGACGATTGGAGCAGATATTGCGATCACAAGACCCAggatcaaaaataattattttttgttctacTAAGAAAATGTGTGATCAACTTGCTCGGAATCTTACACGTCAGTTTGGAGCTGTTGCTATTCATGGGGATAAATCCCAGGGTGAGAGGGATCATGTGTTGAGTCAGTTCCGAACTGGGAGGTCGCCAGTTCTTGTAGCCACAGATGTTGCAGCTCGTGGATTGGACATCAAAGACATTAGgGTGGTTGTCAACTATGATTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCAGGAGCCACAGGCTTGGCTTACACGTTCTTTGGAGACCAGGATGCTAAATATGCTTCCGATCTCATCAAGGTCTTGGAAGGTGCAAACCAGAGAGTCCCTCCAGAGCTTCGTGATATGGCTTCACGCGGGGCTGGTATGAACAGATTCAGACGATGGGGTGCTGGACCTTCTGGTGGCCGTGGTGGAAGGGGTACTGATTCAGGATTTGGTGGAAGGGGCAGTGATTCAGGATCTGGTGGAAGGAGTGGGTGGGGAACTGCTCCTGGCCGAGGTGGAGGCCGTGGATATGATTATGATTCACAGAGGAATGATCGTGGTGGCTATGGACAAGATGTTGATCCTCGTGGCAAGTATGATAGAGGACGCAGTCATAGTCGAAGTCCCGATAGAGGATCAGGTTGGGGTGATCGTAGTAAAAGTTTCCATCGTGATCGTAGTCGGAGTCATAGTCCTGACAGGCATGACAGGGCACCACCACATCAATCCTCCTCGGGTTACAGTTTTCACAAAGCTATGATGGAACGTGGTGGAGGAGATAGAGACCGCAGCAGAAGCTTTAACCGGGATGAAAGGGCTCCAGCATCTAGTTTTCATCAGTCAATGATGGCAAGAGGTCAATCATCCCCTCCCTCCCATCATCGTTCCGGTGGTGAGAGTggtaaagaagagaaaagttcTAGATATACACGGAGGAGTTCACCATCCTCCCATGGTGTTGGCAGGTCAGAGAAGAGTCCTCAACGAGATTGGGGAAGATCTCCTGATGGAAGATATATAGGATCTCATTCTTCCTACCATGGAGAAGAGGAGGAAGGGATGATTCCCGATGAAGAAGGCATGATTCCTCAAGACGATAGCGCATATTA 2381 0.4729 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTSSAPPQKSSSVPSSSVQVQQSAQGVQRGRSPDLSDRYDRNNSGGSNLEAGSRNHQNAKGGSFNSHNVPSGTHVPGNVGSTRGAGTSDAGAGLSPEAYRRRHEITVTGDNVLPPFTSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRCGNDSKLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKVVKEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGDVDELVANKSITQHVEVLPPLEKHRRLEQILRSQDPGSKIIIFCSTKKMCDQLARNLTRQFGAVAIHGDKSQGERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQRVPPELRDMASRGAGMNRFRRWGAGPSGGRGGRGTDSGFGGRGSDSGSGGRSGWGTAPGRGGGRGYDYDSQRNDRGGYGQDVDPRGKYDRGRSHSRSPDRGSGWGDRSKSFHRDRSRSHSPDRHDRAPPHQSSSGYSFHKAMMERGGGDRDRSRSFNRDERAPASSFHQSMMARGQSSPPSHHRSGGESGKEEKSSRYTRRSSPSSHGVGRSEKSPQRDWGRSPDGRYIGSHSSYHGEEEEGMIPDEEGMIPQDDSAY 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00439 793 Gene3D - 378 548 IPR027417 -
Bva03g00439 793 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Bva03g00439 793 MobiDBLite consensus disorder prediction 89 135 - -
Bva03g00439 793 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 101 631 - -
Bva03g00439 793 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Bva03g00439 793 MobiDBLite consensus disorder prediction 602 664 - -
Bva03g00439 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 523 IPR027417 -
Bva03g00439 793 Gene3D - 144 377 IPR027417 -
Bva03g00439 793 SMART ww_5 20 53 IPR001202 GO:0005515
Bva03g00439 793 SMART ultradead3 186 389 IPR014001 -
Bva03g00439 793 MobiDBLite consensus disorder prediction 1 27 - -
Bva03g00439 793 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Bva03g00439 793 MobiDBLite consensus disorder prediction 720 735 - -
Bva03g00439 793 Gene3D - 17 68 - -
Bva03g00439 793 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 372 IPR014001 -
Bva03g00439 793 SUPERFAMILY WW domain 13 53 IPR036020 GO:0005515
Bva03g00439 793 SMART helicmild6 426 506 IPR001650 -
Bva03g00439 793 MobiDBLite consensus disorder prediction 697 719 - -
Bva03g00439 793 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Bva03g00439 793 MobiDBLite consensus disorder prediction 678 696 - -
Bva03g00439 793 Pfam DEAD/DEAH box helicase 191 361 IPR011545 GO:0003676|GO:0005524
Bva03g00439 793 MobiDBLite consensus disorder prediction 47 80 - -
Bva03g00439 793 MobiDBLite consensus disorder prediction 47 144 - -
Bva03g00439 793 Pfam Helicase conserved C-terminal domain 398 506 IPR001650 -
Bva03g00439 793 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 101 631 - -
Bva03g00439 793 MobiDBLite consensus disorder prediction 542 793 - -
Bva03g00439 793 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Bva03g00439 793 CDD WW 22 52 IPR001202 GO:0005515
Bva03g00439 793 CDD SF2_C_DEAD 386 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00439 Bva-Chr3 2557350 2563102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00439 163 544 Eukaryotic Initiation Factors Gene Family AT3G19760 33.763 9.28e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00439 K12823 - gmx:100816455 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00439 03 2557350 2563102 Bva03g00439 03 2557350 2563102 ECH