Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00421 ATGGCCTCTTCTTCTAGCTACTCTAATTGTCCCTGTGCCGCATGCAAGTTTTTGAGAAGGAAATGCATGCCAGACTGCATCTTTGCCCCATATTTCCCTCCAGAAGAGCCTCAAAAATTTGCCAACGTTCACAAAATATTTGGTGCAAGCAACGTGAGCAAGCTCCTCAACGAAGTTCTACCCCATCAAAGAGAGGATGCAGTGAACTCTCTGGCCTACGAGGCCGAAGCACGGATAAAAGATCCAGTCTATGGCTGCGTTGGTGCCATTTCAGTTCTGCAGAGACAAGTGATTAGGCTCCAAAAGGAACTGGATGCCACAAATGCAGATTTGGTCCGTTATACCTGCAATGAAATGCCAACTACTCAAACTTCAGCAGGAAGCAGAAGAATCAATGACGCTGGAGGTTCATCTTATGGTCAATCTTCTGGTTATTATTACAATCCCTCTCCTTGGAATAATGATCCTTGTGATGATGGCTATCACAGAGGAGGAGATAATAacatgtg 509 0.444 MASSSSYSNCPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYTCNEMPTTQTSAGSRRINDAGGSSYGQSSGYYYNPSPWNNDPCDDGYHRGGDNNM 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00421 169 Coils Coil 90 110 - -
Bva03g00421 169 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Bva03g00421 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 157 - -
Bva03g00421 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 4 157 - -
Bva03g00421 169 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00421 Bva-Chr3 2449170 2451084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00421 1 114 AS2 family AT5G63090 86.842 2.82e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva03g00421 LOB 4.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00421 - - var:108328620 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00421 03 2449170 2451084 Bva03g00421 03 2449170 2451084 ECH
Bva03g00421 03 2449170 2451084 Bva04g01740 04 18435950 18438006 ECH