Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00413 ATGGCCATTTCACAGTCCCAACTCTGCTCTCTGCATCCCGATCATTTCCCACTTAGTAAGCCTCGGGTTACTTGCAAAATCAAAACCCCATATCCGCTTTCCTTCAAAAACTTGCACAGTGCCAAATTGAGGTGCTACAGCTTGAAAGCTGGGAATTCGGAGTCTTATCGCCAGTTCTCCTATTCAGATAATGAGGAGTTCGGGAATGCTAATTCTGGGTTTCAGAACCTTTTTATCAAATGGGTTAGCTTTGTTCACTCCATTGTACCAGGTGGGAGCTGGTGGAGCTTATATGAGCGTCAGGGATTCCATAATGATGCGGCAAAGCCAAGAACAGTGTTGCTCTCTCTCCATCGCATTTGGGCATTGGTTGCTGATGAGAGATTGATTATCTTTATCGCATTTGGTTCCCTAGTCATCGCTGCTATTTCAGATATCTCCATACCAAGTATATTGGCTGCATCAATATTTTCGGCACAGAGTGGCGATGCCGTGCTGTTCTCTAGGAAAGCACAGTTTTTAGTTCTTTTGTGTTTCACTTCAGGGGTATTCAGTGGTCTAAGAAGTGGCtgttttggaattttgaaTGCGAGATTGGTAAAGCGTCTGCgagaaaatttatatacagCTGTTCTTCTTCAGGacatatcttattttgataGAGAAAAAGTTGGTGACTTGACAAGTAGGCTTGCAGCAGATTGTCAACGTCTCTCTAATGTTATAGGAAATGATATTCACTTGATATTACGCAACGCTGTTCAGGGAACAGGAGCAGTAATTCATTTGCTGACTCTATCTTGGCCTCTAGCATTGTCCGCCTTGGTGATTTGCTCTATTTTATCGGCAATCTTCCTGGTTTATGGCCAGTACCAAAGAAAAGCGGCAAAGTTGACCCAAGATTTCACCGCTTATGCCAATGAAGTAGGGCAGgaaacattttctttgataagAACTGTTCGAGCTTATGGAActgaaggaaaagaatttggaagGTACAAGCGATGGATGGAGAATTTAGCATTTATAAACTTTAGAGAGAGCGTGGCTTATGGGTTCTggaatctaaattttaatacccTTTTTCGTTCAACTCAGATATTTGCAGTGCTATTAGGAGGGATGTCTGTTCTTAGTTGTTGTGTAACTGTAGAGCAACTTACTCAGTATGTATTATACTGCGAATGGCTGATCTATGCTGCTTGGCGGGTGACAAACAACTTATCATCATTACTGCAGTCTGTTGGAGCATCTGAAGTAGTTTTCCAGCTGATGGATTCATTGCCCAGTGACCAGTTCTTATCGAAAGGAGTAAAGCTGCAGAGGTTAACGGGACGAATCCAATTTGTAAACGTTTCATTTCATTATCCTACAAGGACTAAGATGCCTGTTCTGGAAGACTTGAGCTTTTCTATAGAAGCAAATGAAGTGATTGCAATTGTTGGTCTTAGTGGTAGTGGAAAGAGCACATTACTCAACCTTCTACTTCGTCTCTATGAGACTAGTAATGGTCAGATTTATGTTGATGGATTCCCCATCAAAGAGTTGGATATCGGGTGGCTGAGACAAAACATTGGATATGTTACACAGGAACCACATCTCTTTCGCATGGATATCAAGTCAAACATTGAATATGGTTGCCCAAGAGACGTGGAACAGGAAGATATTGAACGTGCAGCAAAGCAGGCATATGCTCATGACTTTATTTCATTGCTTCCTAATGGCTATGAAACCCTTGTTGATGATAACTTACTCAGTGGTGGGCAAAAGCAACGAATTGCCATTGCTAGGGCTATTCTTAGGGACCCAGttattttgattcttgatGAAGCCACAAGCGCTCTAGATTCTCAAAGCGAGCATTACATCAAGgAGGTGCTTTACGCATTAAAGCGTGAATCTAAAGCAAGAACCATCATTATCATAGCACATAGGCTTTCCACCATAGAAGTCGCCGACAGGATTATTGTAATGGACAAGGGTCGCCTCGTCGAGATGGGCGACCACCAAGGGCTGCTTCTCAAGGATGGAATCTATGCAAGATTAAATAAAGTTCAAAGAGATGTTTTGACTTG 2075 0.4029 MAISQSQLCSLHPDHFPLSKPRVTCKIKTPYPLSFKNLHSAKLRCYSLKAGNSESYRQFSYSDNEEFGNANSGFQNLFIKWVSFVHSIVPGGSWWSLYERQGFHNDAAKPRTVLLSLHRIWALVADERLIIFIAFGSLVIAAISDISIPSILAASIFSAQSGDAVLFSRKAQFLVLLCFTSGVFSGLRSGCFGILNARLVKRLRENLYTAVLLQDISYFDREKVGDLTSRLAADCQRLSNVIGNDIHLILRNAVQGTGAVIHLLTLSWPLALSALVICSILSAIFLVYGQYQRKAAKLTQDFTAYANEVGQETFSLIRTVRAYGTEGKEFGRYKRWMENLAFINFRESVAYGFWNLNFNTLFRSTQIFAVLLGGMSVLSCCVTVEQLTQYVLYCEWLIYAAWRVTNNLSSLLQSVGASEVVFQLMDSLPSDQFLSKGVKLQRLTGRIQFVNVSFHYPTRTKMPVLEDLSFSIEANEVIAIVGLSGSGKSTLLNLLLRLYETSNGQIYVDGFPIKELDIGWLRQNIGYVTQEPHLFRMDIKSNIEYGCPRDVEQEDIERAAKQAYAHDFISLLPNGYETLVDDNLLSGGQKQRIAIARAILRDPVILILDEATSALDSQSEHYIKEVLYALKRESKARTIIIIAHRLSTIEVADRIIVMDKGRLVEMGDHQGLLLKDGIYARLNKVQRDVLT 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00413 691 Pfam ABC transporter 465 613 IPR003439 GO:0005524
Bva03g00413 691 CDD ABC_6TM_TAP 134 421 - -
Bva03g00413 691 PANTHER ABC TRANSPORTER B FAMILY 65 690 - -
Bva03g00413 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 686 IPR027417 -
Bva03g00413 691 ProSitePatterns ABC transporters family signature. 585 599 IPR017871 GO:0005524
Bva03g00413 691 PANTHER ATP-BINDING ABC TRANSPORTER 65 690 - -
Bva03g00413 691 Pfam ABC transporter transmembrane region 132 397 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00413 691 SMART AAA_5 474 662 IPR003593 -
Bva03g00413 691 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 132 413 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva03g00413 691 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 447 685 IPR003439 GO:0005524
Bva03g00413 691 Gene3D - 437 689 IPR027417 -
Bva03g00413 691 Gene3D ABC transporter type 1, transmembrane domain 113 431 IPR036640 GO:0005524|GO:0016021
Bva03g00413 691 SUPERFAMILY ABC transporter transmembrane region 118 431 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00413 Bva-Chr3 2379492 2386033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00413 173 687 Calmodulin-binding Proteins AT2G36910 33.212 5.37e-72 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00413 - - gmx:100797529 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00413 03 2379492 2386033 Bva03g00413 03 2379492 2386033 ECH