Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00410 ATGGACTCACCCATAAACGACCCTGTCGTCGATGGAGAGTCTAACGACGTTAGGGCCTTTGGCCACAGAGAAGAAGACGACGACAAGTCCCAACCTCTTACAGGCGATGGTGCCAGTCCCGGaaaaatattcatagGTGGTTTAGCGAGAGAAACGACAATTGACCAATTTATCAAGCATTTTGGTGACTATGGCGAGATTACGGATTCTGTGATAATGAAGGATCGGAAAACTGGGCAACCTCGTGGATTTGGGTTTATAACTTACGCAGATCCCTCTGTAGTTGATAAAGTTATTGAGGACACTCATATTATCAATGGCAAGCAAGTTGAAATTAAGCGGACAATACCAAGGGGAGCTATTGGGTCTAAGGATTTCAGGacgaagaaaatttttgttggtGGAATTCCGTCAACTGTGACTGAAGATGAGTTTAGAGACTTCTTTACACACTATGGAGAGGTTAAAGATCACCAGATTATGCGGGACCATTCCACTAATCGTTCTCGTGGCTTTGGTTTTATCACCTTTGAATCTGAGGAAGCTGTCGAAGATCTCTTAGCTAAGGGGAACAAGATTGAGTTTTCCGGAACTCAGGTGGAAATCAAGAAGGCTGAGCCAAAAAAACCAAACCCACCACCATCTTCCAAACGCTATAATGACTCAAGATCTTCATTTAGTGGTGGATATGGAGATGGTTATGACGGATTTGGTAGTAGCTTTGGTGTTGGGGGTTACAGGTCCAGTGGTGTCTATGGTGGTAGAGGTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGTGGATATGGATATGCTGGTGCCATGGGGCCCTATAGAGGAGACCCTTCCCTGGGATACTCTGGTCGTTACGGAGGAGGCTTCAGCAGAGGATATGATTTTGGAGGTTATGGTGGACCTGGTGACAATTATGGGGGatatggtggtggtggtgttgGTGGTGGTGGTCCTTCTGGTGGTGCCTATGGAGGTGGCTATGATGCCAGCTTAGGGGGTGGATATGGAGGAGGTAGTGGAGGTTCCTTTTATGGAAGTAGAGGAGGTTACGGAGGAGGTGCTGGGAGTGGTCGGTATCATCCTTATGGAAGATA 1109 0.4491 MDSPINDPVVDGESNDVRAFGHREEDDDKSQPLTGDGASPGKIFIGGLARETTIDQFIKHFGDYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAIGSKDFRTKKIFVGGIPSTVTEDEFRDFFTHYGEVKDHQIMRDHSTNRSRGFGFITFESEEAVEDLLAKGNKIEFSGTQVEIKKAEPKKPNPPPSSKRYNDSRSSFSGGYGDGYDGFGSSFGVGGYRSSGVYGGRGGAYGGYGSEFGGYGYAGAMGPYRGDPSLGYSGRYGGGFSRGYDFGGYGGPGDNYGGYGGGGVGGGGPSGGAYGGGYDASLGGGYGGGSGGSFYGSRGGYGGGAGSGRYHPYGR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00410 369 MobiDBLite consensus disorder prediction 16 32 - -
Bva03g00410 369 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 369 - -
Bva03g00410 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Bva03g00410 369 MobiDBLite consensus disorder prediction 198 224 - -
Bva03g00410 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Bva03g00410 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Bva03g00410 369 Gene3D - 41 120 IPR012677 -
Bva03g00410 369 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 369 - -
Bva03g00410 369 MobiDBLite consensus disorder prediction 1 41 - -
Bva03g00410 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Bva03g00410 369 SUPERFAMILY RNA-binding domain, RBD 38 119 IPR035979 GO:0003676
Bva03g00410 369 SMART rrm1_1 130 203 IPR000504 GO:0003723
Bva03g00410 369 SMART rrm1_1 42 113 IPR000504 GO:0003723
Bva03g00410 369 SUPERFAMILY RNA-binding domain, RBD 125 236 IPR035979 GO:0003676
Bva03g00410 369 Gene3D - 122 236 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00410 Bva-Chr3 2347003 2350050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00410 41 308 Eukaryotic Initiation Factors Gene Family AT1G71770 23.297 6.97e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00410 K12741 - gmx:100813165 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00410 03 2347003 2350050 Bva03g00410 03 2347003 2350050 ECH