Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00406 ATGAAACAACGGATTGCGATACTCGAAAAGCTCAACGTTACCTCTTCAAGCAACCACTCCCATTGCTACAGTACAATTCCCAGTGCCCAACAAATAAGATTCAGAACTGGGACTGGGAGTGGGATAAACACAGAatcagagagagaagagagaagagagaagagagctCCAATGGAGAAAGAGGTTGTGGGAAACCTCTGGCATGGTGATAGAGAAGCTCAAATTCAAGCAGCTATGTTGCTTAGTAGATTGAGCAGTAAGCAGAGGCACAAGTTAGCAGATAAAGGGGTTATTGAACCTCTGATTTCTATGCTTAATTCCCAGGATTATGAAGCCATTGAAGCTGCTCTGTGTGCTCTTCTCAGTCTTGCCTTTGGCAGTGAACGAAACAAGATTCGAATCATCAAATCTGGAGCCTTGCCAGTGTTGTTGAATCTCCTTCGATGCCAAAACCAGACAATGGTAGAATTGACAATAGCTGCCATGCTCACACTCTCTTCGTGCAAGGCAAATAAGTTAGCAATTGCTTCATCTGGGGCTATTCAActcttggttgaatttctgaGTGGAGAACATGCAGATAGCAGCAGCATACAATCCCAGCTTGACACCATAGCTACTCTCCACAACCTCTCAACCTGCCAGGAGATTATGCCattgatttcttcttctggTAGTGTATTTTCCTTGCTAGAACTGATTCATAGCTCGGGAAAATCATGTGAGTTGGTTGAGAAAGCAGTGGGATTTCTTGAGAATATTGTCTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGCATTGGTGGGTCGATTCGGATACTGGTTGAGACGATGGAAGATGGGTCATTGCTGGGCAAAGAGCATGCAGTGGGGATACTGCTACTTATATGCCAGAGTTGTAGAGAGAAATACAGAGGATTGATCTTGAGAGAGGGAGTCATGCCTGGCCTGCTTCAGCTGAGTGTGGATGGAACGGGGAGGGCCAAAAACGTGGCTAGAGAATTGTTGCTGCTTCTCAGAGATGGCTCCAGTTATGGCTCAACAAGTAAACAAACGAATCATGAGCTTATAGAACAGATCATGCAGGAAATTGATGCAAAAGGAGAGCAATTAGGTGGGGCTACATTGAGGTTGGTGGAAGAGATGATTGCAAAGCTCAATACATG 1169 0.4243 MKQRIAILEKLNVTSSSNHSHCYSTIPSAQQIRFRTGTGSGINTESEREERREKRAPMEKEVVGNLWHGDREAQIQAAMLLSRLSSKQRHKLADKGVIEPLISMLNSQDYEAIEAALCALLSLAFGSERNKIRIIKSGALPVLLNLLRCQNQTMVELTIAAMLTLSSCKANKLAIASSGAIQLLVEFLSGEHADSSSIQSQLDTIATLHNLSTCQEIMPLISSSGSVFSLLELIHSSGKSCELVEKAVGFLENIVSSSESALCEAASIGGSIRILVETMEDGSLLGKEHAVGILLLICQSCREKYRGLILREGVMPGLLQLSVDGTGRAKNVARELLLLLRDGSSYGSTSKQTNHELIEQIMQEIDAKGEQLGGATLRLVEEMIAKLNT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00406 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 138 180 IPR000225 GO:0005515
Bva03g00406 389 Gene3D - 43 384 IPR011989 -
Bva03g00406 389 MobiDBLite consensus disorder prediction 44 59 - -
Bva03g00406 389 SUPERFAMILY ARM repeat 61 341 IPR016024 -
Bva03g00406 389 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 58 369 - -
Bva03g00406 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 225 260 IPR000225 GO:0005515
Bva03g00406 389 MobiDBLite consensus disorder prediction 36 59 - -
Bva03g00406 389 Pfam Armadillo/beta-catenin-like repeat 128 156 IPR000225 GO:0005515
Bva03g00406 389 Pfam Armadillo/beta-catenin-like repeat 85 124 IPR000225 GO:0005515
Bva03g00406 389 PANTHER U BOX DOMAIN-CONTAINING 58 369 - -
Bva03g00406 389 SMART arm_5 85 125 IPR000225 GO:0005515
Bva03g00406 389 SMART arm_5 127 167 IPR000225 GO:0005515
Bva03g00406 389 SMART arm_5 168 213 IPR000225 GO:0005515
Bva03g00406 389 SMART arm_5 214 256 IPR000225 GO:0005515
Bva03g00406 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 96 138 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00406 Bva-Chr3 2313123 2314747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00406 61 342 U-box Gene Family AT3G54790 33.566 3.87e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00406 - - gmx:100778534 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00406 03 2313123 2314747 Bva03g00406 03 2313123 2314747 ECH