Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00397 ATGGCGAAATCATTATCCTTAACCCACTTATGGTTCTTATTGTCTCATTCTAGAGGTATGGCCACTGTAAGAGTACTTCATCAATTGCTTccaccttcaaagttgacaccTTTGAGAAAAGCTAATTGCCCTGTATCTTCCTCCTTAAGAACATTCTCCACCACATCCACGCCTTACCCACTTCAATACGAGATGATTATCAACCGCCCAGCTAAGTCCGAATCTGCCCAGACTCGCCGCCGGGCTCTTCGTCGCAGTGAGTTCAATTCAGACGACTTCCCTGAATCGGAGTCACCGGAAGAGTCCACTTCAGAATTGGGATTAGATAGTTGGGTTGATCGAAAACTGGCTTCGGGGATGGAAACAGACCAACCCGGCTCCCCAAAATTAGAGATTGACAAGGCTAAGAGGAAGTATTACAATAAACGGAGGAAGAGGATGTATGGCTCAGACTCGGATGAAGAAAATCGGCGGCCAGAAGAGCAGTTCGTGGAACTAAAGCCAGAGGTAGTGGAGCTTCCTACATTGCACAAGAGAGAGGAGGAATTGTATTTCTATGATACGTTTGCTTATCCGTGGGAAAAGGACAAGCATTATAAGATGGTTTATCAGTTAGAGAAGAAGTATTTTCCTGATCAGTGTCTCGATAAAGCGTTTCTTGAACCGGGAGAATCAAATGCAGATGTGAAGAACAAGGTGAAGGCAAAGAAGAAAGTCAGAGgtgaaagaaaggagaagaaggatGAGGTTGGTGATGAGAGTGATGATAAGAAGTTGTTATTCTTTGAGGAGAAGGcagtagaagaaaaaaggaataatagAGAATCGGTTGAGGATGGTAGCAAAGATCTTATGGAAAAGAAGGTGGAGGGGTTCTTTAAGAGTTTGACGAAAGTTCCCAAAAAGGATGCTGAAGCTGGTAATGGAGAGCCATATCTCGCTTCAAGGACTACTGGACTCCCTCCCAGATGGGACTGTCCTCATGGCACTGTGGTTTTGGTGAACAAACCCAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCTTGGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACTCTTGATCCTATGGCTACTGGTTTATTGATTGTTTGTGTTGGTAAAGCAACGAAGGTGGTAGATAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCCTGGGGGAGGCCACTTCAACATGGGATGCTGATTCACCGGTCATTCAACGTGAGCCATGGGAACACATCAAAGACGAGGATATAAGGAGAACTGCTTCGTCCTTTGTTGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAAATGTATGAGAAGGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGTATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTAGATGACAGgcagaatttgatttttaggGTGACATGTTCTAAAGGGACATACATTCGATCACTATGTGCAGATTTTGGGAAGGCTCTTGGCAGATGCTCATCATGCATTGTGTGCACTGTAGAAACATGCATTCGTGCACTCTGCACACTACTGAGCTTGTTTAGTTGTGCCCATTTAACTGCTCTCCGAAGAGACTCTATTGGGAAATATTCAGCAAATGATGCATGGGAGTTCCAAGAGCTGGAAGAGGCTATTTCCAAAAGTTATTTCTA 1718 0.4226 MAKSLSLTHLWFLLSHSRGMATVRVLHQLLPPSKLTPLRKANCPVSSSLRTFSTTSTPYPLQYEMIINRPAKSESAQTRRRALRRSEFNSDDFPESESPEESTSELGLDSWVDRKLASGMETDQPGSPKLEIDKAKRKYYNKRRKRMYGSDSDEENRRPEEQFVELKPEVVELPTLHKREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLEPGESNADVKNKVKAKKKVRGERKEKKDEVGDESDDKKLLFFEEKAVEEKRNNRESVEDGSKDLMEKKVEGFFKSLTKVPKKDAEAGNGEPYLASRTTGLPPRWDCPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRRTASSFVGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGKYSANDAWEFQELEEAISKSYF 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00397 548 MobiDBLite consensus disorder prediction 70 108 - -
Bva03g00397 548 MobiDBLite consensus disorder prediction 230 251 - -
Bva03g00397 548 CDD PseudoU_synth_EcTruB 331 542 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva03g00397 548 Coils Coil 267 287 - -
Bva03g00397 548 Gene3D Pseudouridine synthase 326 547 - -
Bva03g00397 548 MobiDBLite consensus disorder prediction 74 92 - -
Bva03g00397 548 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 303 545 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva03g00397 548 SUPERFAMILY Pseudouridine synthase 330 543 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva03g00397 548 Hamap tRNA pseudouridine synthase B [truB]. 328 548 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva03g00397 548 Pfam TruB family pseudouridylate synthase (N terminal domain) 350 500 IPR002501 GO:0006396
Bva03g00397 548 Pfam tRNA pseudouridylate synthase B C-terminal domain 501 544 IPR032819 -
Bva03g00397 548 TIGRFAM TruB: tRNA pseudouridine(55) synthase 330 539 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00397 Bva-Chr3 2256692 2262315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00397 331 532 NAC Transcription Factor Family AT3G57150 32.673 2.08e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00397 K03177 - zju:107415230 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00397 03 2256692 2262315 Bva03g00397 03 2256692 2262315 ECH