Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00373 ATGGCTTATCTTCCATGCTTGCTTCTTTtagctctctctcttttcgCACCCAACTTTGTTTCCTCCTCAGCTGTTCAACACCCTGAGCTTGTTGCACAAGACGTCCACAGGAGAATCAATGCCTCCAGAAGAAATTTGGGTTATTTATCATGTGGAACTGGTAACCCCATTGATGATTGCTGGAGGTGTCAACCCAACTGGGAGAGCAACCGGCAAAGGCTTGCCGACTGCGCCATTGGGTTCGGCAAGAATGCCATCGGAGGAAGAAATGGTCGAATCTATGTTGTCACCGACTCCGGCGACGACGACCCGGTCAACCCTAAGCCGGGAACCTTAAGATACGGTGTTATTCAAGATGAGCCGTTGTGGATCATCTTCAAAAGAGACATGGTTATCAATCTCGAGCAAGAGCTTGTGATGAACTCCTACAAGACCATTGATGGAAGGGGTGCTAGTGTCCACATTGCCGGTGGTGGCTGCTTTACCATACATTATGTTTCTAACATCATCATCCATGGCATTCACATCCATGATTGTAAGTCAACGGGGAATGCTGACATCAGAGACTCTCCTCACCATGCCGGGTGGTGGAGGAAATCCGACGGTGATGGTGTCTCCATCTTCAGTTCAAAGCATGTGTGGATTGACCACTGCTCGTTGTCTAACTGCCAAGACGGACTCATCGATGTCATCCATGGATCCACGGCCATCACCATTTCTAACAACTATATGACTCATCATGACAAGGTCATGCTCTTGGGCCACAGTGACTCTTATACACAAGACAAGGATATGCAAGTCACCATAGCCTTCAATCATTTTGGGGAAGGGCTCGTTCAAAGAATGCCAAGGTGTAGACACGGTTACTTTCATGTGGTGAACAATGACTATACTCACTGGGAAATGTACGCAATTGGTGGTAGTGCTGACCCCACCATCAACAGTCAAGGAAATAGGTTTCTTGCACCAGACAAGGGGTCTAGCAAGGAAGTAACAAAGCACGAGGACGCTCCAGAGGATGAATGGATGCACTGGAACTGGAGGTCAGAGGGTGACCTCTTCTTGAACGGAGCATTCTTCAGGCAATCTGGTGCTGAAGCCTCTTCCAGCTACGCTAGGGCGTCCAGCCTCAGCGCAAGACCATCAAATCTCGTGGGTTCAATGACTGTCACTGCAGGGGCACTCAACTGCAGAAAGGGCAACAGCTGCTG 1211 0.4839 MAYLPCLLLLALSLFAPNFVSSSAVQHPELVAQDVHRRINASRRNLGYLSCGTGNPIDDCWRCQPNWESNRQRLADCAIGFGKNAIGGRNGRIYVVTDSGDDDPVNPKPGTLRYGVIQDEPLWIIFKRDMVINLEQELVMNSYKTIDGRGASVHIAGGGCFTIHYVSNIIIHGIHIHDCKSTGNADIRDSPHHAGWWRKSDGDGVSIFSSKHVWIDHCSLSNCQDGLIDVIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLAPDKGSSKEVTKHEDAPEDEWMHWNWRSEGDLFLNGAFFRQSGAEASSSYARASSLSARPSNLVGSMTVTAGALNCRKGNSC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00373 403 PANTHER PECTATE LYASE 18-RELATED 7 400 IPR045032 GO:0030570
Bva03g00373 403 SUPERFAMILY Pectin lyase-like 34 397 IPR011050 -
Bva03g00373 403 SMART amb_all 129 326 IPR002022 -
Bva03g00373 403 Gene3D - 54 396 IPR012334 -
Bva03g00373 403 PANTHER PECTATE LYASE 7 400 - -
Bva03g00373 403 Pfam Pectate lyase 137 320 IPR002022 -
Bva03g00373 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Bva03g00373 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Bva03g00373 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Bva03g00373 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Bva03g00373 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Bva03g00373 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Bva03g00373 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Bva03g00373 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00373 Bva-Chr3 2154244 2155945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00373 2 403 Polysaccharide Lyase AT5G63180 73.892 0.0 619
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00373 03 2154244 2155945 Bva03g00373 03 2154244 2155945 ECH