Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00307 ATGGAGGCAGCTTCCGGGCCCCACTTCTCGGGTCTCCGTCTTGATggccttctttcttctccgccttcttcatcttcttcatctcctGCTCATCGTTTTTCTTCTGCTGCTGCTTCTGCTCTGGATTCCGCTGCCTTAGGCTCCGACTCCGCTACCACACAGCCCTTTGTTATCGGAGTTTCGGGAGGTACTGCTTCAGGTAAGACCACGGTTTGTGATATGATCATCCAGCAGCTTCACGATCACCGCGTTGTGCTTGTCAATCAGGACTCATTCTATCGTGGTTTGACGCCTGAAGAATTGCTACGCGTGCATGAGTACAATTTTGATCATCCAGATGCTTTTGACACCGAACAGCTATTAGAATGCATGCGACAACTCATTGCTGGCCACTTTGTCCAAGTCCCAGTTTATGACTTTAAGAAGCACCAGCGCTCTTCAGAAAGTTTTCGGCAGGTTAATGCTTCTGATGTCATCATATTGGAGGGAATTCTGGTTTTCCATGACCAACGCGTCCGTGATCTGATGAACATGAAAATCTTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTCGACGTGATACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAGTTTGTCAAGCCTgcctttgatgattttgttcTACCCTCAAAGAAGTACGCTGATGTGATCATTCCACGAGGAGGTGATAATCATGTTGCTATCGATCTGATTGTGCAACATATCCGCAcaaaacttggtcaacatgaTCTATGCAAAATATATCCAAATGTATATGTCATTCAGTCAACATTCCAGATAAGAGGAATGCATACACTGATACGTGACAGAGACATATCAAAGCATGACTTCGTATTTTATTCAGATCGACTTATCCGTCTGGTTGTTGAACATGGCCTTGGTCATTTGCCATTTACTGAAAAACAAATAGTTACGCCAACAGGATCTGTCTATACTGGTGTTGACTTTTGCAAGAAATTGTGCGGTGTTTCAATTATTCGAAGTGGTGAGAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGcataaaaattggaaaaatccTGATTCACCGAGATGGAGACAATGGAAAGCAgCTTATATATGAGAAGCTTCCCAAGGATATTTCGGAACGTCATGTCTTGCTTCTTGACCCCGTCCTGGCTACAGGTAATTCTGCGAACCAAGCAATTGAGCTACTCATCCAGAAAGGAGTTCCAGAATCTCACATAATATTCCTGAATCTCATCTCTGCTCCGGAGGGAATCCATTGCGTGTGTAAAAGGTTTCCATCCTTGAAAATTGTCACGTCTGAGATTGATGTTGCAATAAATCAAGAGTTCCGTGTTGTCCCAGGACTGGGCGAGTTTGGTGATCGCTACTTTGGAACCGACGACGATTG 1433 0.4166 MEAASGPHFSGLRLDGLLSSPPSSSSSSPAHRFSSAAASALDSAALGSDSATTQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTPEELLRVHEYNFDHPDAFDTEQLLECMRQLIAGHFVQVPVYDFKKHQRSSESFRQVNASDVIILEGILVFHDQRVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQIVTPTGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVAINQEFRVVPGLGEFGDRYFGTDDD 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00307 477 CDD UMPK 57 255 IPR000764 -
Bva03g00307 477 Pfam Phosphoribulokinase / Uridine kinase family 57 243 IPR006083 GO:0005524|GO:0016301
Bva03g00307 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 248 IPR027417 -
Bva03g00307 477 SUPERFAMILY PRTase-like 258 475 IPR029057 -
Bva03g00307 477 Pfam Uracil phosphoribosyltransferase 273 474 - -
Bva03g00307 477 PANTHER URIDINE KINASE 9 473 - -
Bva03g00307 477 CDD PRTases_typeI 332 447 IPR000836 -
Bva03g00307 477 PRINTS Uridine kinase signature 187 197 - -
Bva03g00307 477 PRINTS Uridine kinase signature 55 72 - -
Bva03g00307 477 PRINTS Uridine kinase signature 130 145 - -
Bva03g00307 477 PRINTS Uridine kinase signature 85 96 - -
Bva03g00307 477 PRINTS Uridine kinase signature 223 236 - -
Bva03g00307 477 PRINTS Uridine kinase signature 201 212 - -
Bva03g00307 477 Gene3D - 51 258 IPR027417 -
Bva03g00307 477 TIGRFAM udk: uridine kinase 55 255 IPR000764 -
Bva03g00307 477 Gene3D - 259 474 IPR029057 -
Bva03g00307 477 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 9 473 IPR029930 GO:0004849|GO:0044206
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00307 Bva-Chr3 1831048 1836533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00307 1 477 PRT Gene Family AT5G40870 86.373 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00307 K00876 - gmx:100780005 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00307 03 1831048 1836533 Bva03g00307 03 1831048 1836533 ECH
Bva03g00307 03 1831048 1836533 Bva04g01832 04 19029790 19036069 ECH