Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00305 ATGGTGGAGGATTCTAGCCAACTGGAAGAAACACGAATCAGCTACAACATGGACGGAGAAGTTGATGGAGAACAAAGAGACCCAGAAAGCAATCCATTGAACGAGCCACTACTCAAGAGGAATCGGACGCTATCTTCCAATCCACTTGCCCTAGTTGGAGCCAAAGTTTCCTATATAGAGAGTTTGGATTATGAGATTAATGAGAATGATctattcaagcatgattggaGGAGAAGATCAAGAGATCACGTATTGCAGTATATATTATCGAAATGGACACTGGCATTCCTTGTTGGACTTCTTACTGGTCTAATAGCCACTctcatcaatcttgcttgtgAGAACATTGCAGGCTACAAGCTTCTTGCTGTGGTTGAATACATCCAGCAGGGCAGGTACCTGGCAGGTTTCTTGTATTTCGCTggcttcaattttcttttaactttggTTGCTGCTGTTCTGGTTGTGTGGTTTGCGCCCACGGCAGCTGGACCTGGCATTCCTGAAATCAAAGCTTACCTCAATGGCGTCGATACTCCCAACATGTTTGGTGCCTCAACATTGATAGTGAAGATAATTGGAAGCATTGGCGCTGTCTCTGCTGGCCTAGATTTAGGAAAGGAAGGACCCTTGGTCCATATTGGCAGCTGCATTGCTTCCTTACTAGGCCAAGGGGGTCCGGACAATTACCGTGTCAAGTGGCGTTGGTTTCGCTATTTCAACAATGATCGTGACCGTCGTGATCTTATTACCTGTGGTTCTTCTTCAGGGGTTTGTGCAGCTTTCCGAGCACCTGTTGGTGGTGTTCTCTTCGCACTTGAAGAAGTGGCAACCTGGTGGAGAAGTGCTCTGCTTTGGAGAACCTTCTTTAGCACAGCTGTGGTGGTTGTGGTGCTCAGAGCCTTCATCGAAATATGCCATTCTGGGAAATGTGGTCTTTTTGGAGAAGGAGGGCTGATCATGTTTGACGTGAGCAATGTCACTGTGAGGTACCATGTGATGGATATATTCCCCGTCGTAATCATTGGAGTCATTGGTGGGCTGTTAGGTAGCCTTTACAACCATCTTCTCCACAAGATCCTCAGACTCTACAATCTCATCAATCAGAAGGGAAGATTGCATAAGCTCCTCCTCAGTGTCGCTGTTGCGCTCTTCACGTCTATGTGCCAATATGGTCTCCCTTTCCTAGTAAAATGCACCCCCTGTGATTCCTCACTTCCAGAGTTCGATTGTCCAACCAATGGACGGTCAGGAaactttaaacaatttaactgCCCTAAGGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACTAATGATGATGCTGTCCGAAACATATTCTCAACCAACACTCCTCAGGAATTTCACCCTACCTCCctcctaattttcttttcactctaTTGCATATTAGGATTAATTACTTTTGGAATTGCTGTGCCGTCTGGACTCTTCCTCCCAATTATTCTCATGGGCTCAGGCTATGGCCGCCTTCTTGGCATCCTAATGGGACCTCATACAAACATTGATCAAGGGCTCTTTGCTGTTCTTGGTGCAGCCTCCCTCATGGCTGGTTCAATGAGAATGACCGTCTCCCTTTGTGTAATCTTCCTTGAACTAACCAACAACCTTCTCCTTCTACCTATAACAATGATTGTCCTCCTAGTAGCCAAAACAGTTGGAGATTGTTTCAACCCAAGCATCTATGAGATCATACTACATTTAAAAGGTCTTCCTTTCTTGGATGCAAATCCAGAGCCATGGATGAGAAATCTCACAGTTGGTGAGCTTCTTGATGTCAAACCAGCAGTTGTTACCCTCCAAGGAGTAGAGAAGGTAGCCCGAATAGTAGATGTGTTGAAAAACACCACACATAATGCTTTTCCGATCCTAGATGATGGAGCAATACCACCAGCAGCTGTGGCCAACGGAGCAACAGAACTACATGGACTGATCCTAAGAGCACACCTCATCCAAGCGCTAAAGAAGAAATGGttcttgaaagagaaaaggagaacAGAGGAATGGGAAGTTAGAGAGAAATTTACCTGGGTAGAACTAGCTGAGAGAGAATGGAATATTGAAGAGGTGGCTGTGACAAGGGAGGAAATGGAGATGTTTATTGATTTACATCCTCTCACCAACACAACTCCCTATACAGTGCTAGAAAGCATGTCAGTGGCAAAAGCAATGGTTCTCTTTCGACAAGTAGGACTGCGCCACCTGCTTGTTGTACCAAAGTATCAGGCATCTGGGGTATCTCCGGTGATTGGGATCTTGACCAGGCAGGATTTATTAGCCTACAATATTCTCACAACCTTTCCTCACCTGGAAAAGTCTAAGagcagagaaaagagaaactg 2366 0.4307 MVEDSSQLEETRISYNMDGEVDGEQRDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKHDWRRRSRDHVLQYILSKWTLAFLVGLLTGLIATLINLACENIAGYKLLAVVEYIQQGRYLAGFLYFAGFNFLLTLVAAVLVVWFAPTAAGPGIPEIKAYLNGVDTPNMFGASTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWRWFRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHSGKCGLFGEGGLIMFDVSNVTVRYHVMDIFPVVIIGVIGGLLGSLYNHLLHKILRLYNLINQKGRLHKLLLSVAVALFTSMCQYGLPFLVKCTPCDSSLPEFDCPTNGRSGNFKQFNCPKGYYNDLATLLLTTNDDAVRNIFSTNTPQEFHPTSLLIFFSLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGILMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLVAKTVGDCFNPSIYEIILHLKGLPFLDANPEPWMRNLTVGELLDVKPAVVTLQGVEKVARIVDVLKNTTHNAFPILDDGAIPPAAVANGATELHGLILRAHLIQALKKKWFLKEKRRTEEWEVREKFTWVELAEREWNIEEVAVTREEMEMFIDLHPLTNTTPYTVLESMSVAKAMVLFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAYNILTTFPHLEKSKSREKRN 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00305 788 Gene3D - 587 774 IPR046342 -
Bva03g00305 788 MobiDBLite consensus disorder prediction 1 37 - -
Bva03g00305 788 Gene3D Clc chloride channel 83 584 - -
Bva03g00305 788 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva03g00305 788 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva03g00305 788 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva03g00305 788 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva03g00305 788 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva03g00305 788 Pfam Voltage gated chloride channel 148 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva03g00305 788 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 769 - -
Bva03g00305 788 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva03g00305 788 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva03g00305 788 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva03g00305 788 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva03g00305 788 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva03g00305 788 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva03g00305 788 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva03g00305 788 CDD ClC_6_like 60 582 - -
Bva03g00305 788 ProSiteProfiles CBS domain profile. 715 779 IPR000644 -
Bva03g00305 788 SUPERFAMILY CBS-domain pair 586 769 IPR046342 -
Bva03g00305 788 SUPERFAMILY Clc chloride channel 69 584 IPR014743 -
Bva03g00305 788 MobiDBLite consensus disorder prediction 15 29 - -
Bva03g00305 788 Pfam CBS domain 717 769 IPR000644 -
Bva03g00305 788 PANTHER CHLORIDE CHANNEL PROTEIN 5 783 - -
Bva03g00305 788 SMART cbs_1 718 771 IPR000644 -
Bva03g00305 788 SMART cbs_1 604 663 IPR000644 -
Bva03g00305 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 5 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00305 Bva-Chr3 1821265 1826240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00305 8 782 Ion Channels AT3G27170 79.742 0.0 1257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00305 K05016 - gmx:100788620 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01833 04 19038664 19042957 Bva03g00305 03 1821265 1826240 BWGD
Bva03g00305 03 1821265 1826240 Bva03g00305 03 1821265 1826240 ECH