Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00301 ATGGTGAAATACTCAAGAGAGCCTGACAACCCAACAAAATCTTGCAAGGCTCGAGGTCAGGATCTGCGTGTTCATTTTAAGAACACAAGGGAAACAGCGTTTGCAATCAGGAAGTTGCCTTTGGCAAAGGCTAAAAGGTACTTGGAAGACGTGCTTGCCCACAAGCAGGCTATCCCCTTTCGACGATTTTGTGGTGGTGTTGGTCGCACTGCTCAAGCAAAGAACCGTCATTCCAATGGTCAAGGACGCTGGCCTGTCAAGTCAGCAAGGTTTATCCTTGATTTGCTGAAAAATGCTGAGAGCAACGCAGAGGTTAAAGGCCTTGATGTGGATGCTCTATACATTTCCCATATCCAGGTGAACCAAGCTCAGAAGCAGAGGCGCCGTACCTACCGTGCTCATGGGAGAATTAATCCATACATGTCATCACCCTGCCACATTGAGTTGATTTTGTCTGAAAAGGAGGAACCAGTCAAAAAGGAGCCCGAGACACAGTTGGCTCCCAGGAAATCCAATAGTTCGTA 524 0.4752 MVKYSREPDNPTKSCKARGQDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAPRKSNSS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00301 174 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bva03g00301 174 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Bva03g00301 174 PANTHER 60S RIBOSOMAL PROTEIN L17-1 ISOFORM X1 1 172 - -
Bva03g00301 174 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bva03g00301 174 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bva03g00301 174 MobiDBLite consensus disorder prediction 153 174 - -
Bva03g00301 174 Gene3D Ribosomal protein L22/L17 1 174 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bva03g00301 174 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bva03g00301 174 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bva03g00301 174 PANTHER 60S RIBOSOMAL PROTEIN L17 1 172 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00301 Bva-Chr3 1802972 1804976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00301 1 169 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.533 3.52e-115 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00301 K02880 - cpap:110825807 331.643