Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00280 ATGGAGTGGGACTGGAAAGAATGTGTGTGGGATCCGGCTGGGCTAGAAGTATCAAGTGGTGGCTCGGCAGAGCACAACTGTGGAGGAGCTTCGGTGAATTCGAAGATTGTAGAGACTTGTGATTCGTCTGAAAAATCAGGTTCCGATTCTGCTGCTAAGGACCCAAGAGAGTCAAAAACGGCATCATCCCCTTCTGGTTCTGGGTCGTCAAAGAGGAGCCGTATGAATAATGGATCGCAGAATATGACGTGCTCGGTAGATGGCTGCAACTCCGACCTCAGTAGTTGCAGAGAATATCACCGTCGCCACAGGGTCTGTGAGAAACACTCCAAGACCCCTATAGTACTTGTAGGGGGCAAGCAGCAGCGGTTCTGCCAACAATGCAGCAGATTTCACTCTCTAGGGGAGTTTGATGAGGTTAAGAGGAGTTGCAGAAAGCGTCTTGATGGGCATAACAGGCGCAGAAGAAAACCTCAGGCACCGTCTCTTTTCATGGCTGCTGAGAGATTTCTGACCAATTACAAAGGGCCCAGAATCCTGCACTTCGGTGGTCCTCAGACATATGCCAATCCTATTACGAGAAATATGTGGCCTGTCACTGCCAAAACTGGAGCTGATTCCATAAACTATGATCGGCGCCTACCTTTGCACAGGACTGAACAACAAAGAGTTATGAACTCGTTTGCTAGCGTACCACATGGACAAGATAAGCAACTTCCTCTCTTGCATGGAAATGACCCTTTTGCAGGCTTTGGCAATGAAGCAGTGCCTGTAATTTCAGCAAGTCAGccaatatatgatgccattgcCTCTGCAGCAGCAAGTGGAAAGGGCAGCCAGAAGCTGGCTTCCGATGGCAAACCCGGATCTTTCGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACCTCAAGCACAAAATTCCGAGTTGAGCTCGGTGCAGTCCAGCATCTCCTGCCCTGTACAATCTCCGTTAGGATATGATCATTTTGATGCTGTGGACAAGTATTCATTCCCAGAAAGTTCCAGAGATAAGCCTACTGGTCCAGTATTGGTTCTAGAAGCAAACACAAACAACCTTCACTGCAGTGGGATGCTGCGCGATGGATTGCTTGGAAATGGAGACTCGGTGACACTCCCATTTTTCTGGGAATA 1154 0.4801 MEWDWKECVWDPAGLEVSSGGSAEHNCGGASVNSKIVETCDSSEKSGSDSAAKDPRESKTASSPSGSGSSKRSRMNNGSQNMTCSVDGCNSDLSSCREYHRRHRVCEKHSKTPIVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQAPSLFMAAERFLTNYKGPRILHFGGPQTYANPITRNMWPVTAKTGADSINYDRRLPLHRTEQQRVMNSFASVPHGQDKQLPLLHGNDPFAGFGNEAVPVISASQPIYDAIASAAASGKGSQKLASDGKPGSFDSGCALYLLSTPQAQNSELSSVQSSISCPVQSPLGYDHFDAVDKYSFPESSRDKPTGPVLVLEANTNNLHCSGMLRDGLLGNGDSVTLPFFWE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00280 384 Gene3D - 75 145 IPR036893 GO:0003677|GO:0005634
Bva03g00280 384 SUPERFAMILY SBT domain 82 162 IPR036893 GO:0003677|GO:0005634
Bva03g00280 384 Pfam SBP domain 84 157 IPR004333 GO:0003677
Bva03g00280 384 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 23 384 - -
Bva03g00280 384 ProSiteProfiles Zinc finger SBP-type profile. 81 158 IPR004333 GO:0003677
Bva03g00280 384 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 384 IPR044817 GO:0003677
Bva03g00280 384 MobiDBLite consensus disorder prediction 38 79 - -
Bva03g00280 384 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00280 Bva-Chr3 1705325 1708050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00280 80 198 SBP-box Gene Family AT5G50670 58.824 7.82e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva03g00280 SBP 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00280 - - lja:Lj1g3v3847150.1 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00280 03 1705325 1708050 Bva03g00280 03 1705325 1708050 ECH