Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00248 ATGTTGATACGCTGTGATTTTTGTGACTCGAAAACGGCGGTGCTCTACTGCAAAGCTGACACAGCAAAGCTTTGCTTGTTATGTGACCAGCACGTCCACAAAGCCAATGCTCTTTCACTCAAGCACGTCCGTTTTCAAATTTGCGACAACTGTAAGAACGAAGCCGCCACAATTCAGTGCCCTACCGATACCCTTATGCTATGCCAAGAATGCGATTGGGACATTCACAACAACTGTTCGACCTCTTCACTCCATGAACGCTCCCAAGTTGAAGGTTTTTCTGGGAGTCCCTCAATTATTGAGCTGGCCACATTTTTTGGGTTTGATTTGAAACCAAAAGATTTGATCGCTATGGATTGTAGGCCTCGTCTATATGAGCACAAATTGAGGGACGATGCTAAAGAGCAATTGTTGGAGATGGCTAGGGGAAATTTAGCTAAAATAGATAAAGAAGGAGCTGAGCTGGGTCCAGGGACACCTCCGAGTAGATTAGCCCAGCAAGTAGATGTGGATAGCCTTGAGTTGAACAACGGTTACGACGATGAGTTGCTGAAGCAGCAAACCCCGTTCACATCTTTACTTATGTTACCAACTGATGCGGACTTGAGAAAAACTGGTTACGCAAGTGAAGGAGATCTTCTGTGGGATTGCAATCCCTCATATCAGATGGCTCAGGTTTGGGATTTCCAATTAGGAAAATCTAGACATTGCGGAGAACCAAAGTTATTGACGTTTGACAGTCTCAAGCAAGATTCCTTAGTGATACCAGGAACATTTCAAGACATAGACAATATGAATCGCATGACAATTAATGATGATCTGTTGTCAAGAACTGACAAGGTTCACATGGGGGAGGGAACATTAATGGAGGAAAGAAAGGGTTTATTTTCAAATCAATCAGATCAATCATCATCCAGCCATGTaataatgaaagaagaaagcaacaaGAAACCTAGAGATGAGTTTTCGTCGGTTTCCAAGTTGATGGAATCCATAATTTACAGTGGCACAGTCATGGAGCACCACGTAGGTGGGAGTGAGAATTCAAACATGGTGACAACCAAGGTTAACACGGAGGAGCTGGCAAAGAATAGAGGGGATGCAATGTTACGCtacaaggagaagaagaaaactcgAAGGTATGATAAACACATTCGTTATGAATCAAGGAAGGCCAGGGCTGACATGAGGAAGCGGGTGAGAGGGCGATTTGTGAAGGCAACTGATGCAACGGATGCTCAGGTATA 1247 0.4258 MLIRCDFCDSKTAVLYCKADTAKLCLLCDQHVHKANALSLKHVRFQICDNCKNEAATIQCPTDTLMLCQECDWDIHNNCSTSSLHERSQVEGFSGSPSIIELATFFGFDLKPKDLIAMDCRPRLYEHKLRDDAKEQLLEMARGNLAKIDKEGAELGPGTPPSRLAQQVDVDSLELNNGYDDELLKQQTPFTSLLMLPTDADLRKTGYASEGDLLWDCNPSYQMAQVWDFQLGKSRHCGEPKLLTFDSLKQDSLVIPGTFQDIDNMNRMTINDDLLSRTNQSDQSSSSHVIMKEESNKKPRDEFSSVSKLMESIIYSGTVMEHHVGGSENSNMVTTKVNTEELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADMRKRVRGRFVKATDATDAQV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00248 396 MobiDBLite consensus disorder prediction 277 304 - -
Bva03g00248 396 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Bva03g00248 396 Pfam CCT motif 346 388 IPR010402 GO:0005515
Bva03g00248 396 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-LIKE 4 395 - -
Bva03g00248 396 CDD Bbox1_BBX-like 47 90 - -
Bva03g00248 396 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 395 - -
Bva03g00248 396 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515
Bva03g00248 396 CDD Bbox1_BBX-like 5 47 - -
Bva03g00248 396 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bva03g00248 396 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bva03g00248 396 SMART bboxneu5 48 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00248 Bva-Chr3 1511427 1514360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00248 2 390 C2C2-CO-like Transcription Factor Family AT2G33500 37.850 1.52e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva03g00248 CCT 2.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00248 - - aprc:113862926 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00248 03 1511427 1514360 Bva03g00248 03 1511427 1514360 ECH