Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00240 ATGGCGACCAGGTACTGGGTGGTGTCTCTTCCCGTCCAAAATTCGGCATCTGCTCTTTGGAACCAACTGCAAGAGCAAATTTCCAAGCATTCCTTCGATACTCCGCTTTACAGATTCAATATACCTAATCTCCGTGTTGGAACCCTAGATTCTCTCCTTTCTCTCAGCGATGATCTCGTAAAGTCAAACAGTTTTATGGAAGGAGTGTCACACAAAATCCGGAGACAGATTGAGGAATTGGAGAGAGTTTCTGGTGTAGTGAGTAGTGGCCTGACAGTTGATGGTGTGCCTGTTGATTCATACTTGACAAGGTTTGTTTGGGATGAAGCCAAGTACCCTACTATGTCTCCTCTGAGGGAGATCGTTGATAGCATCCATGGTCAAGTGGCAAAAATTGAGGATGATCTCAAGGTGCGTGTTGCTGAGTATAACAACATCCGCAGTCAGCTTAATGCTATCAACAGAAAGCAAAGTGGAAGCTTAGCCGTCCGTGATCTTTCAAATCTGGTAAAGCCTGAGGATATTATAACTTCAGAACATTTAACTACCCTCCTAGCAATCATTCCCAAGTATTCACAGAAGGATTGGCTTGCTAGCTATGAAACATTGACGAGCTATGTGGTCCCTAGGTCTTCCAAGAAGTTGTATGAGGATAATGAATATGCTCTTTATACTGTTACTCTCTTCAGTCGTGTTGCAGACAATTTTCGGACTAGTGCACGAGAAAAAGGGTTCCAAATTCGTGATTTTGAGTACAGTCAAGAAACACATGAAGGTCGGAAGCAAGAGTTAGAGAAATTGATGCAAGATCAGGAAAGTTTGAGAGGTTCTCTGTTGCAATGGTGTTACACTAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGCGCTGTACGTGTTTTTGCTGAGAGTATTCTAAGATATGGCCTGCCACCATCTTTCTTGGCATGTGTTCTAGCTCCATCTACGAAGGGTGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGTGTGACAGCGCAAACAGTGCATACTGGAAGACCGAGGATGAAGGTGGGATAGCTGGTCTGGCAGGTGATGCTGATGCCCACCCGTATGTCTCCTTCACCATCAATCTTGTTTG 1124 0.4431 MATRYWVVSLPVQNSASALWNQLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFMEGVSHKIRRQIEELERVSGVVSSGLTVDGVPVDSYLTRFVWDEAKYPTMSPLREIVDSIHGQVAKIEDDLKVRVAEYNNIRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLTTLLAIIPKYSQKDWLASYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSQETHEGRKQELEKLMQDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSTKGEKKVRSILEGLCDSANSAYWKTEDEGGIAGLAGDADAHPYVSFTINLV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00240 374 Coils Coil 254 274 - -
Bva03g00240 374 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 373 - -
Bva03g00240 374 Gene3D - 41 312 - -
Bva03g00240 374 SUPERFAMILY Vacuolar ATP synthase subunit C 1 373 IPR036132 GO:0015078|GO:0033180|GO:1902600
Bva03g00240 374 Gene3D - 163 251 - -
Bva03g00240 374 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bva03g00240 374 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Bva03g00240 374 Pfam V-ATPase subunit C 5 367 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bva03g00240 374 CDD V-ATPase_C 5 371 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00240 Bva-Chr3 1468800 1473607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00240 1 373 Primary Pumps ATPases(2) AT1G12840 83.957 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00240 K02148 - gmx:100803728 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00240 03 1468800 1473607 Bva03g00240 03 1468800 1473607 ECH
Bva03g00240 03 1468800 1473607 Bva04g01899 04 19364538 19369789 ECH