Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00232 ATGGAGAGGGAGATGCTACCAAGAGCTCATGGCCTTCCTTGGATGGAAGGAGAAGTTGAAGACGCAGCATCTTGGACCAGAACTAACAACGAAGCTGAGCCCAAGGACGAGGACATTGCCATGGGTGGCCCTTTAACGTCCTTCAAGTCAATGCTTGAAGGTGACTGGTACTTGAACGCTGCTATTAACCCATCTCACCAGGACTTCCCTAACCTCTCAAATCACCATGAAACCAGAGATATTGGATTTTGCCCAAACCCAACTGATAATTTTCTCATACAGCCTGTCGATTCGTCGGCTTCATGTGAACAATCATTCAATCTTGACCCATCACAGTCACAGCCTTTTTTGCCCCCTAAATCGTGCTTCTCTTCTCTATTCAATGTCAGTAACAACAACCCTTTTGACAATGGCTTCGATTTGGGCTCTGAAACTGGGTTTCTCTCTCCATTCCAGGGAaatcaaacttcaaattcCCCTGGTTTGATGGGGTTCTCTGGATTAAATGCTCAATCTCAGATGGGTTCTCTCGAACTGAGTTCAAGTTCCGAGTTCCCAGCTACTCGGCTGCTGTCAGTAGCTGACAATGCCACCGCACTTGGTAGCGGAATTAGTCCAACGGCTTTTGAAGGCTTGGATAGTTCTGGAAGTGCTCTGTTTCTGAACAGCTCCAAGGTTTTAAGACCTCTTGACGTATTTCCTCAAGTGGGGTCGCAACCAACTCTTTTTCAGAAGCGAAAGGCTCTTCGCCAAAATTCTGGTGGAGCTGATAAATTGGGAACTTTGGATATTTCGGCATCGAGATTTGAGGATTCTTCAATGAGGTTGGAGAACATggagaggaagaggaagaaaacagATGAGAGCGAAATTGAGGAATTGAGCTTCGATGCTTCAGGGCTGAATTATGATTCTGACGAGCTCAATGAGTGTGGTAAGGTAGAGGAGAATGGGAATTACGTAGCAAGCAATTCAAATGTAGATAGTACTGTCCATAAGGGGAAGAAAAAGGGGCTACCGGCGAAAAATCTCATGGCTGAGAGGCGGCGCAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCGGTTGTGCCAAAAATTAGCAAGATGGACAGGGCATCCATACTTGGGGATGCAATTGACTACTTGAAGGAGCTTCTGCAGCGGATTAACGATCTGCATAATGAGCTGGAGTCAACTCCTCCTGGTTCATTGCTTCCATCATCTTCTACAAGCTTTCACCCTTTGACACCCACTCCACCAACTCTTCCCTGCCGAGTCAAGGAAGAATTATGCCCTAGCTCCTTGCCAAGCCCAAAGAATCAACCTGCAAGGGTGGAGGTTAGGCTAAGGGAAGGGAGAGCTGTCAACATCCATATGTTTTGCGGCCGCCGACCAGGTCTTTTGTTATCCACTATGAGGGCTCTGGATAACCTTGGATTGGATGTTCAGCAAGCCGTTATCAGTTGTTTCAATGGTTTCGCTTTAGATGTTTTCAGAGCTGAGCAATTCAGAGAAGGCCAGGATGTGCTCCCTGAGCAAATCAAAGCTGTGCTGTTGGATTCAGCGGGTTTTCATGTATG 1586 0.4571 MEREMLPRAHGLPWMEGEVEDAASWTRTNNEAEPKDEDIAMGGPLTSFKSMLEGDWYLNAAINPSHQDFPNLSNHHETRDIGFCPNPTDNFLIQPVDSSASCEQSFNLDPSQSQPFLPPKSCFSSLFNVSNNNPFDNGFDLGSETGFLSPFQGNQTSNSPGLMGFSGLNAQSQMGSLELSSSSEFPATRLLSVADNATALGSGISPTAFEGLDSSGSALFLNSSKVLRPLDVFPQVGSQPTLFQKRKALRQNSGGADKLGTLDISASRFEDSSMRLENMERKRKKTDESEIEELSFDASGLNYDSDELNECGKVEENGNYVASNSNVDSTVHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLPSSSTSFHPLTPTPPTLPCRVKEELCPSSLPSPKNQPARVEVRLREGRAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQFREGQDVLPEQIKAVLLDSAGFHV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00232 528 MobiDBLite consensus disorder prediction 1 35 - -
Bva03g00232 528 Coils Coil 381 401 - -
Bva03g00232 528 CDD bHLH_AtAMS_like 341 412 - -
Bva03g00232 528 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Bva03g00232 528 CDD ACT_UUR-ACR-like 459 519 - -
Bva03g00232 528 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 92 527 - -
Bva03g00232 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Bva03g00232 528 SMART finulus 344 393 IPR011598 GO:0046983
Bva03g00232 528 Gene3D - 330 401 IPR036638 GO:0046983
Bva03g00232 528 PANTHER BHLH TRANSCRIPTIONAL FACTOR 92 527 - -
Bva03g00232 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 410 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00232 Bva-Chr3 1416046 1419726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00232 46 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 57.692 4.76e-156 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva03g00232 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00232 - - vvi:100265294 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01904 04 19403594 19408206 Bva03g00232 03 1416046 1419726 BWGD
Bva03g00232 03 1416046 1419726 Bva03g00232 03 1416046 1419726 ECH
Bva03g00232 03 1416046 1419726 Bva04g01904 04 19403594 19408206 ECH