Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00221 atggaaaatttcatATACCCTGTTTATCCATCACCATCTGAGGCCCAAGAGAAACAAACTCCCTCTCCCTCTTCATATCTTATCCGTACCAGTGATTCTAGCACCTTCCAAATCCCAGTCCCACATGGACAACTAAGCAACTCTTCTAGCTTGATCGAGAAACAGCAGGCCCCATCTCTTCCTGTTCATCAAGGTAATGTAAGAAAAAGACATTATAGGGGAGTTAGGCAGAGACCGTGGGGCAAATGGGCAGCCGAAATCCGAGACCCAAAAAAGGCCGCAAGAGTCTGGCTTGGTACGTTTGACACGGCAGAGGCTGCTGCAGCTGCTTATGATGCTGCAGCACTCAGGTTCAAAGGAACCAAAGCCAAGCTAAATTTTCCCGAACGCATTGCTCTAAGACAAGACTCAGCTTCAACCTACACTCCATCGCCACCCAATAATGTTAATGTGCAATTTGCCAGCCGGCCAGTAGCTCCTTCTCCACCGTCTGGTGAGGCAGTTCCGCCGGTTTCTCCAGCTTTACCACCTCCTTTGCCGGACATGGGATTCCCTAACCTTATGCAGTATGCGCAGCTGCTTCGTAGCCACGATGATTATGATTTCCAACGTGCTGCTTTTGGTCTTTATGGTTCCAACGAGCCAGCAGCTCAATTTCCATTCTTCTCGACTTCGACAGGTTCTCAGGCTGAGTATGAGCAACATGATCAGGTTGAAGATACACAGAAGGGAGAGCATGGTTATTTTTTTGACCAAGGGAATTTTGATAGAAATGAATA 779 0.4711 MENFIYPVYPSPSEAQEKQTPSPSSYLIRTSDSSTFQIPVPHGQLSNSSSLIEKQQAPSLPVHQGNVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALRFKGTKAKLNFPERIALRQDSASTYTPSPPNNVNVQFASRPVAPSPPSGEAVPPVSPALPPPLPDMGFPNLMQYAQLLRSHDDYDFQRAAFGLYGSNEPAAQFPFFSTSTGSQAEYEQHDQVEDTQKGEHGYFFDQGNFDRNE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00221 259 Pfam AP2 domain 71 120 IPR001471 GO:0003700|GO:0006355
Bva03g00221 259 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Bva03g00221 259 MobiDBLite consensus disorder prediction 233 259 - -
Bva03g00221 259 MobiDBLite consensus disorder prediction 40 73 - -
Bva03g00221 259 MobiDBLite consensus disorder prediction 13 28 - -
Bva03g00221 259 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Bva03g00221 259 MobiDBLite consensus disorder prediction 1 28 - -
Bva03g00221 259 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Bva03g00221 259 MobiDBLite consensus disorder prediction 220 259 - -
Bva03g00221 259 PANTHER DNA-BINDING DOMAIN 41 219 IPR044808 GO:0003700|GO:0009873
Bva03g00221 259 MobiDBLite consensus disorder prediction 40 62 - -
Bva03g00221 259 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 41 219 - -
Bva03g00221 259 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Bva03g00221 259 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Bva03g00221 259 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Bva03g00221 259 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00221 Bva-Chr3 1348640 1350521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00221 61 144 AP2-EREBP Transcription Factor Family AT5G61890 76.744 6.05e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva03g00221 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00221 - - gsj:114398791 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00221 03 1348640 1350521 Bva04g01911 04 19438822 19440844 BWGD
Bva03g00221 03 1348640 1350521 Bva06g01576 06 11276684 11279055 ECH
Bva03g00221 03 1348640 1350521 Bva05g00184 05 893342 894587 ECH
Bva03g00221 03 1348640 1350521 Bva03g00221 03 1348640 1350521 ECH
Bva03g00221 03 1348640 1350521 Bva04g01911 04 19438822 19440844 ECH
Bva06g01678 06 11780672 11782758 Bva03g00221 03 1348640 1350521 ECH
Bva05g00103 05 522496 523054 Bva03g00221 03 1348640 1350521 ECH