Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00207 ATGATGAGCTCGTTTGCGTCCCCATCATCGTCCAAGTGCAAAAAGAAGCAAACGGCGACGACGACGCAAGAACAACAACATGAAACGGCATGGGGAGGGAGGTACCTGGGTGTTCGGAGAAGGCCGTGGGGGAGATACGCGGCGGAGATTCGAGACCCTTCCACCAAGGAAAGGCATTGGCTTGGCACCTTCGACACTGCTGAAGAAGCTGCCTTGGCTTACGATCGAGCAGCTCGCTCCATGCGCGGCTCACGTGCCCGAACCAACTTCGTCTACTCGGATACCCCTCCAGGTTCTTCAGTTACCTCCATTATCTCCCCCGATGAGCAAACTCGCCACAACCACGACTACTCCTCGCTATTTGCCCCGAATTCGGTTACCCACCAGCCCGACCCTACCTCCCAGCTAGCCGATTGCAATTTCGCGGGTGGGTTCCTGGGGATTACGGACACTAACAACTGGACTTCGCCGGCTATCTTTAACCAAGCATCCACCATGGAGTTGAATGTTCAAGATGTCAATGTGTCTAATTTCCACCAACCTTATGATGATAATAGTGTTGAGCTTCCTCCATTGCCACCGGATATCACCAGCTCCACGGGTTACGAGATGGGCCATGAGTTTTACAGCAATGAGTTCGGGTATTCGGAGCAGAGCAGCGGGTCCGGGACTACTTCGACAGGATTTGAATCCTCGACCGGGTCGTCTTATTCATATTTGGGCTTCGATTCGGGAGACTACGTGCATAGCCCACTCTTCAGCACAATGCCACCAGTGTCTGATAAGCTCCCTGAAGGCTTTGATTTGGGCACCTCCTCTTATTTCTTCTG 830 0.5313 MMSSFASPSSSKCKKKQTATTTQEQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTSIISPDEQTRHNHDYSSLFAPNSVTHQPDPTSQLADCNFAGGFLGITDTNNWTSPAIFNQASTMELNVQDVNVSNFHQPYDDNSVELPPLPPDITSSTGYEMGHEFYSNEFGYSEQSSGSGTTSTGFESSTGSSYSYLGFDSGDYVHSPLFSTMPPVSDKLPEGFDLGTSSYFF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00207 276 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 276 - -
Bva03g00207 276 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Bva03g00207 276 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Bva03g00207 276 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Bva03g00207 276 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Bva03g00207 276 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Bva03g00207 276 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Bva03g00207 276 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Bva03g00207 276 MobiDBLite consensus disorder prediction 1 33 - -
Bva03g00207 276 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Bva03g00207 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF087 4 276 - -
Bva03g00207 276 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00207 Bva-Chr3 1270763 1271593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00207 9 268 AP2-EREBP Transcription Factor Family AT5G13910 43.956 1.93e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva03g00207 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00207 K09286 - gmx:100815668 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01923 04 19520672 19521505 Bva03g00207 03 1270763 1271593 BWGD
Bva03g00207 03 1270763 1271593 Bva03g00207 03 1270763 1271593 ECH