Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00182 ATGGGATTAAAATGCGAGAGGCAGCCGAAGCCAGATCTCTCTGATCTTACACCGCGAAAGGCCTACTTTCCCTTTTCGGATTTACAGCAATTTCCCAATTTACAGAGAAAAATGAACGACCTCATGACCAAGTCATTCACCAGCTATGTGGATCTGAAGAAAGCCGCCATGAAAGACATCGATTTGGAAGCTGGACTTCCGCCGAAGGACTTGGAGCTGAGCTCTTCAACGACCAACATGGATACCGACATGGGTCTCTTCCTGGAAGAAGCCGAGAAGGTGAAAACAGAGATGGGTAATCTGCGTGAGATTCTTGAAAGGCTTCAACAAGCCAACGAACAGAGCAAGTCCCTGCACAAGCCCGAAGCCCTGAAAGCATTGAGGAACAGGATCAATGCTGATATAGTCTCTGTGCTAAAAAAGGCTAGAGAGATTCGATCTCAGCTTGAAGAAATGGACCATGCCAATGCCGCTAACAGGAGACTGTCTGGACTCAAAGATGGCACCCCTGCAATTTACAGGACCCGAATTGCAGTCACCAATGGACTGCGCAAGAAGCTGAAGGAGCTGATGATGGACTTCCAGGGATTGAGACAGAGGATGATGACAGAATACAAAGAAACCGTGGGAAGACGCTATTTCACGGTGACCGGGGAAAACCCAAATGAAGAGGTGATCGAGAAGATAATCTCTAACGGCGATGAAGAATTTCTAAGCAGAGCTATAAAAGAACACGGGAGGGGAAAGGTCCTGGAAACTGTGGTGGAGATTCAGGACAGGCACGACGCTGCTAAAGAGATTGAGAAGAGTCTGCTGGAGCTTCACCAGGTGTTTCTGGATATGGCAGTGATGGTGGAGGCACAAGGTGAGAAGATGGACGACATTGAGCACCATGTTCTCCATGCTTCACACTACGTGAAAGATGGAACTAAGGATCTGCAGACTGCAAAGAAATATCAGAGGAGCAGCAGGAAGTGGATGTTTATTGCCCTCATACTTCTCCTCGTTATCATTCTTGTAATTGTCGTCCCAATTGCCACCAGTTTCTCTAGTTCTTG 1058 0.4745 MGLKCERQPKPDLSDLTPRKAYFPFSDLQQFPNLQRKMNDLMTKSFTSYVDLKKAAMKDIDLEAGLPPKDLELSSSTTNMDTDMGLFLEEAEKVKTEMGNLREILERLQQANEQSKSLHKPEALKALRNRINADIVSVLKKAREIRSQLEEMDHANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMDFQGLRQRMMTEYKETVGRRYFTVTGENPNEEVIEKIISNGDEEFLSRAIKEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKDLQTAKKYQRSSRKWMFIALILLLVIILVIVVPIATSFSSS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00182 352 PANTHER SYNTAXIN 42 345 IPR045242 -
Bva03g00182 352 Pfam SNARE domain 291 342 IPR000727 -
Bva03g00182 352 SMART SynN_4 79 206 IPR006011 GO:0016020
Bva03g00182 352 ProSitePatterns Syntaxin / epimorphin family signature. 260 300 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva03g00182 352 Gene3D - 250 349 - -
Bva03g00182 352 Coils Coil 88 118 - -
Bva03g00182 352 Gene3D - 84 212 - -
Bva03g00182 352 CDD SynN 84 241 IPR006011 GO:0016020
Bva03g00182 352 CDD SNARE_syntaxin1-like 253 315 - -
Bva03g00182 352 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 42 345 - -
Bva03g00182 352 SUPERFAMILY t-snare proteins 82 309 IPR010989 GO:0016020|GO:0016192
Bva03g00182 352 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 254 316 IPR000727 -
Bva03g00182 352 Pfam Syntaxin 87 289 IPR006011 GO:0016020
Bva03g00182 352 SMART tSNARE_6 249 316 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00182 Bva-Chr3 1137834 1139248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00182 38 352 SNARE and Associated Proteins AT1G08560 68.553 1.49e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00182 K08486 - gmx:100816016 506.908