Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00177 ATGGAAGAACCAGTAGTTGTGAACAAAGGAGAAGAAACTCTGGATTTGCCTCCAGGTTTCAGATTCCACCCCACAGATGAAGAGATCATAACCTTTTATCTAACCGAGAAGGTGATGAACAGCAGTTTCAGTGCAACTGCAATGGGAGAAGTTGATTTGAACAAGTGTGAACCTTGGGATTTGCCCAaGAAAGCGAAGATGGGGGAGAAGGAGTGGTTCTTCTTCTGCCAGAGAGATAGAAAGTACCCAACTGGGATGAGAACAAATCGAGCCACCGAATCGGGTTACTGGAAGGCCACCGGAAAAGATAAAGAGATTTTCAAAGGAAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTCTTCTATAGAGGGAGAGCTCCAAAAGGAGAGAAAACCAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTTTCTTACAATCTCCCCAAAGCTGCAAAGGATGAATGGGTTGTAAGCAGGGTTTTCCACAAGAACACAGATATCAAAAACACCCCAATTCCTGGCCTCTTGAGGGTGAACTCCCAGAGTGATGATCTGCTGGATTGCTCCACACTCCCACCTCTCATGGACCCTCATCCTCCTAATTACAGCGACGATGATTTCAAAGGGATTACCAACCCAACTTCATCAGACGGCTATTTTCTCCCCAGCTTCTCAATCAACAATTCTCAGCTGCTGATCAAAAACAGCAACAGAAACTTTGAGATGCCGCAGCACCCTACTACCTGCAACTACAACCAAGTCAACTTGATGGGAAACTCCAATGTTCCACAGCAACAAATTCAAGTCCAGAATCCCAGTTTCTCGAGATCCTTCCATAATAATGCAGTGTTCTCATCAGATTACATGCACCAAGACCAAGGCGTTGCACTCGCAGGTGGTTCTTGTTTCGAGGACAATATCAACCATGAAGCTCTTATAAGAGCATTTGCAGCCAAGAATGAATTCAACATGCATGGGTTGGAAAAGCAGTGCAAGGTGGAGCAGTTCTCAGGCAACCAGTCGGCGGTGGTCAGCGCCTCGCAGGACACCGGAGTCAGCAATGACAGAAACACTGCAGATATCTCGTCGGCAGTTTCCAAGCAGCAACAAGTGGGGGCAAACAGGTCATTATACCAAGAGTTTGATGGCCCATCTTCTCTTGCTCCTCTTTCAGACTTTGATGGTTGCCTCTGGGATGATTACTCATG 1217 0.461 MEEPVVVNKGEETLDLPPGFRFHPTDEEIITFYLTEKVMNSSFSATAMGEVDLNKCEPWDLPKKAKMGEKEWFFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFSYNLPKAAKDEWVVSRVFHKNTDIKNTPIPGLLRVNSQSDDLLDCSTLPPLMDPHPPNYSDDDFKGITNPTSSDGYFLPSFSINNSQLLIKNSNRNFEMPQHPTTCNYNQVNLMGNSNVPQQQIQVQNPSFSRSFHNNAVFSSDYMHQDQGVALAGGSCFEDNINHEALIRAFAAKNEFNMHGLEKQCKVEQFSGNQSAVVSASQDTGVSNDRNTADISSAVSKQQQVGANRSLYQEFDGPSSLAPLSDFDGCLWDDYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00177 405 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Bva03g00177 405 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Bva03g00177 405 Gene3D NAC domain 25 171 IPR036093 GO:0003677|GO:0006355
Bva03g00177 405 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Bva03g00177 405 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100-LIKE 3 398 - -
Bva03g00177 405 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00177 Bva-Chr3 1101951 1103981 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00177 1 217 NAC Transcription Factor Family AT5G18270 72.368 2.02e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva03g00177 NAM 8.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00177 - - aprc:113861501 539.265