Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00171 ATGGATGTTTGCCGGAAAATATCTGTTTCCGGTGAATGCCAGCAAGAACAGGCCCTCTCTCCTTCTTGCTCAAAGCGTTCTAGCTTTTCAAACAGCCTTGATGACCTCTTCTCTGCTCAGAACACTGAAGTTGATGTTAGCTTGGAATGGCTGTCAGTGTTTGTGGAAGACTGTTTTTCCAGCCAAGCAAGCTGTCTCTTGGCACCTTGTGATGTTCAAACTACAACTACAAGCACAAGCTCCAAACCCTCAAGAGCATTACAGAGACCCCAGCAAAAGCCCTCTCCTCtgcaaaattttgttgtgCCTGGAAAAGCcagaagcaaaaggaaaaggctTTCAGCCCCTAAAAGCAGAGACCCTTTAAGCATTTGGTCTCACCATTTAAACCCACAAAATGAACCCTTGAATATAACCAATTCAGACCCTCCACTTCTGAAACAGGCCTACTGGTTAGCTGACAGTGAACTGATTGTactcaaaaaggaaaatgagcGAGAAAtaagcaaagaagaagaagaagaagaagaagcagcagAGAAGGAGATTGTGAACAAGGAGAGGTTGGAGAACAGTGAGATTAGCGATGGGCAGCATCCAATGCCAAGAAGGTGCACCCATTGCCTGGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTCTGCAATGCATGTGGGGTGAGATACAAGTCTGGTAGGTTGCTGCCAGAGTATAGGCCTGCCAAGAGTCCTACTTTGTG 755 0.4212 MDVCRKISVSGECQQEQALSPSCSKRSSFSNSLDDLFSAQNTEVDVSLEWLSVFVEDCFSSQASCLLAPCDVQTTTTSTSSKPSRALQRPQQKPSPLQNFVVPGKARSKRKRLSAPKSRDPLSIWSHHLNPQNEPLNITNSDPPLLKQAYWLADSELIVLKKENEREISKEEEEEEEAAEKEIVNKERLENSEISDGQHPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00171 251 Gene3D - 195 250 IPR013088 GO:0006355|GO:0008270
Bva03g00171 251 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 246 - -
Bva03g00171 251 Pfam GATA zinc finger 205 239 IPR000679 GO:0006355|GO:0043565
Bva03g00171 251 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 250 - -
Bva03g00171 251 CDD ZnF_GATA 204 250 IPR000679 GO:0006355|GO:0043565
Bva03g00171 251 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
Bva03g00171 251 SMART GATA_3 199 249 IPR000679 GO:0006355|GO:0043565
Bva03g00171 251 ProSiteProfiles GATA-type zinc finger domain profile. 199 235 IPR000679 GO:0006355|GO:0043565
Bva03g00171 251 MobiDBLite consensus disorder prediction 76 123 - -
Bva03g00171 251 MobiDBLite consensus disorder prediction 76 98 - -
Bva03g00171 251 PANTHER GATA TRANSCRIPTION FACTOR 1 250 - -
Bva03g00171 251 Coils Coil 157 192 - -
Bva03g00171 251 MobiDBLite consensus disorder prediction 168 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00171 Bva-Chr3 1066000 1067511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00171 48 251 C2C2-Gata Transcription Factor Family AT4G32890 38.571 5.99e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva03g00171 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00171 - - qsu:112040553 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01960 04 19718766 19720062 Bva03g00171 03 1066000 1067511 BWGD