Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00146 ATGAACGATCTTCTATCGGGATCGTTTGAGATCCCACGGAGTCAAAGTAATGGAGTCAGAGATATTGAGTTAGGAGCATATGGAATGAATTCAGGAGAATTGGGCTTggataatttcttcaaaaagGTTCAAGAACTTGATAGACAATATGCAGCACTGGATAAACTTCTGAAGAATCTCCTGGATGCATACGAGGAGTCCAAAGCTGTTACAACGGCTGCCGCCATAAAGGCTATTAAGCAAAGAATGGAGAAAGATGTtgatgaaattaagaaaattgccCGTCatttaaagacaaaaattgaagaacttGACAAAGAGAATCTGACAAATAGGCAGGAGCCTGGGTGTGGAAAAGGATCTGGCATTGACCGGTCAAGAACAGCAACAACCATcgccttaaaaaagaaactgaagGACAAAATGGCTGAATTTCAGTCCCTGCGGGAAACCATCCAACAAGAATATCGTGAAGTTGTTGAGAGACGTGTGTTTACAGTGACCGGCACAAGAGCTGATGAGGagACTATTGACAGACTAATTGAAACTGGAGATAGCGAACAAATCTTCCAGAAGGCAATTCAGGAACAAGGACGAGGCCAGATAATGGACACTCTGGCAGAAATCCAAGAGCGGCACACTGCAGTCAGAGAAGTAGAGAAGAAGCTTCTTGATTTACAAGAGATATTTCTGGACCTGGCGGTGTTAGTAGATGCACAAGGGGACATGCTTGACAATATCGAATCACAGGTCTCAAGTGCAGTAGATCACGTGCAGCAAGGTAATAACGCCCTCATTAAGGCAAAGAAGCTACAGAAGAATTCAAGAAAATGGATGTGCATTGCAATTATCATACTTCTCATTGTTGTTATAATCACCGTTGTTGGTGTCATCAAACCATGGGGTAACAAAAATGGTGCCTA 923 0.3944 MNDLLSGSFEIPRSQSNGVRDIELGAYGMNSGELGLDNFFKKVQELDRQYAALDKLLKNLLDAYEESKAVTTAAAIKAIKQRMEKDVDEIKKIARHLKTKIEELDKENLTNRQEPGCGKGSGIDRSRTATTIALKKKLKDKMAEFQSLRETIQQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHTAVREVEKKLLDLQEIFLDLAVLVDAQGDMLDNIESQVSSAVDHVQQGNNALIKAKKLQKNSRKWMCIAIIILLIVVIITVVGVIKPWGNKNGA 307
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00146 307 Coils Coil 80 107 - -
Bva03g00146 307 Coils Coil 135 158 - -
Bva03g00146 307 Pfam SNARE domain 242 294 IPR000727 -
Bva03g00146 307 Gene3D - 196 299 - -
Bva03g00146 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Bva03g00146 307 CDD SynN 36 193 IPR006011 GO:0016020
Bva03g00146 307 Coils Coil 43 63 - -
Bva03g00146 307 SMART SynN_4 31 157 IPR006011 GO:0016020
Bva03g00146 307 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Bva03g00146 307 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Bva03g00146 307 PANTHER SYNTAXIN 3 297 IPR045242 -
Bva03g00146 307 SMART tSNARE_6 201 268 IPR000727 -
Bva03g00146 307 CDD SNARE_syntaxin1-like 205 267 - -
Bva03g00146 307 Gene3D - 33 160 - -
Bva03g00146 307 PANTHER - 3 297 - -
Bva03g00146 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva03g00146 Bva-Chr3 950202 956113 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00146 1 307 SNARE and Associated Proteins AT3G03800 73.616 9.80e-158 441
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00146 K08486 - gmx:100306329 453.366