Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00117 ATGGAACAGGTTTCCAAGAAAGGCTGCAAATTGAGTGAATtagaggaaaaagagaaagaagtgaCTGCAAGTGTTTTTCTGCAATGCGCAGAGCTGATTGTTCCATGGCTAACCCCATTGGAAATTGCCAATGTGTCTTTAACCTGCAGAGCGGTTTATCAAATCTGCAAGTCTATCACTCTTCGCCGATCATCTGACGCTTCCAGAGCATTCGAGAACTTGCCTGTCCCATTTCGGAACACCGTCGATAATCGACCGTACGCTTACTTCATCTACACCCATTCCCTAATTCTACCCGTTGCTTCAGAATGTTTACGTCAATCTTGGGGTTCCAATTTTGTTACCATGCCCAACTCCAACCTGGTGGGTCAACTTGCTATGGAATCAGTTAATTTGGTCGATGAGCTGGGTCAGAGTGTATCTGGATGTGACTGTGAGAATTGTGGGGAGGGGAGGGAGGAGGATACCAGTACGAGTGGCAGATGCCCATGTTTGAGTTTGAATGCATTGGATGTAGCTAGTGAGTGCGGACCCAGTTGCAGCTGCGGATTGGAGTGTGGAAACCGGCTGAGTCAGAAGAAGATTGCAGTTCGGTTGAAGATTGTGAGGGATAGGAGGAAAGGATGGGGTTTGTATGCTGACCAGTTGATTCAGAAAGGCCAATTCGTGTGTGAGTACGCAGGTGAACTCTTGACAACCAAGGATGCAAGGAGACGGCATCAATTTTATGATGAACTTGCGTCTGGTGGGCATTTCTATTCTGCTCTTTTGGTTGTGAGGGAGCATCTTCCATCTGGAAAGGCGTGTTTGAGAATCAATATTGATGCCACAAGAATAGGAAATGTCGCCAGGTTCATTAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGCTCAGGTGCTTTGTTTCCTCGCCTTTGCTTCTTTGCTTTAAAAGATATTCAAGAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCACAGGGTTTGCCATGTTTCTGTAACAGTTCTTCTTGTTTTGGAATATTGCCTTCAGAAGACACTTA 1070 0.4402 MEQVSKKGCKLSELEEKEKEVTASVFLQCAELIVPWLTPLEIANVSLTCRAVYQICKSITLRRSSDASRAFENLPVPFRNTVDNRPYAYFIYTHSLILPVASECLRQSWGSNFVTMPNSNLVGQLAMESVNLVDELGQSVSGCDCENCGEGREEDTSTSGRCPCLSLNALDVASECGPSCSCGLECGNRLSQKKIAVRLKIVRDRRKGWGLYADQLIQKGQFVCEYAGELLTTKDARRRHQFYDELASGGHFYSALLVVREHLPSGKACLRINIDATRIGNVARFINHSCDGGNLSTKLVRSSGALFPRLCFFALKDIQEDEELTFSYGEIRKRPQGLPCFCNSSSCFGILPSEDT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00117 356 SUPERFAMILY SET domain 62 342 IPR046341 -
Bva03g00117 356 ProSiteProfiles SET domain profile. 197 329 IPR001214 GO:0005515
Bva03g00117 356 ProSiteProfiles Post-SET domain profile. 336 352 IPR003616 -
Bva03g00117 356 Pfam SET domain 208 329 IPR001214 GO:0005515
Bva03g00117 356 SMART set_7 197 335 IPR001214 GO:0005515
Bva03g00117 356 Gene3D SET domain 59 351 IPR046341 -
Bva03g00117 356 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 20 345 - -
Bva03g00117 356 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 20 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00117 Bva-Chr3 826483 830930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00117 66 349 Su(var)3-9 homologs AT1G73100 29.467 2.06e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva03g00117 SET 3.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00117 K11433 - jre:109003288 471.085