Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00065 ATGGGTTTTGATGAATATGAGTACTTAGAGGAAACCGTTGAAAAACCTGATCAtaagaaggagaaggaaacAGTTAACGGAGGGAATGGAACTGTAAAATCTGAAGAGAGAGATCGTAGTCAGAGGCATAATGTTGAAGAGAAGGATGATGATGTTGAGCACCGGTTGAAGCATTCAAAATCTAGAGATGATTCTGATGATTATGAGCGGCAGAGAGAAAATGGCTCATCTCGTTACCGTTCTCAGTCCAGGGATAGAAACAAGGAGAAGGATCAACACAGAAGCATCCGGGACCATAGGGATAGGGATAGAGACAGGGATGACAGATATGGAAGGGAGGGACATAGAGAGCAGGATAGTAACCGAGAAAGAGACAAAAGAGACCGTGGCAATGACAGtaaaagagaaagggagagagagCGCTCAAGGCGAAGTAGGAGTAGATCTGAGAGGCATCGAAGTGATTTGGATGAAAGAGACAGAGAGCAGAGTCATGACAGGGACTATAGAGACAGAGAAAGAAGTAGGGACAAGGATTACAGAGACAAGGAAAGGGAGAGGGAATTAAGGGAAAGGGACAGAGAAAACAGaaggaaagagaaaaaggaagaggcaGCAGAGCCTGAAGCTGATCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCACTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGTCTAATAATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGgTACATTGAGTTCTATGACGTCATGTCTGTCCCTATGGCAATAGCACTTTCTGGTCAGCCTCTACGTGGTCAACCAGTGATGGTGAAGCCATCTGAAGCAGAAAAGAATCTGGTTCAATCTACTACTGCTGTTATCACTGGATCCACTGGACTTACAGGCCCTTATTCTGGAGGAGCGAGAAGGCTGTATGTTGGCAATCTGCATTTCAGTATTTCTGAAGTTGACCTTCGTAGGGTGTTTGAGTCATTTGGTCAGGTGGAGCTAGTTCAGCTGCCTCTTGATGAAACTGGACATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGTCTTGAAGATGCCAGAAATGCGCAGAGTTTGAATGGGCAATTGGAAATTGGTGGCAGGATAATCAAGGTATCAGCAGTTACTGATCAGTCTGAAATGACAGAAGTTGGACTTGGAGGAAATACTGGTGATTTGGATGACGATGAAGGTGGTGGCTTGTCCCTTAATGCAAGTTCCCGAGCACTACTTATGCAGAAGTTGGCTGCATCAAGCGTTGCTGGTCCCTTCGGTAATTCTGCTGTAAACAGTACAGGCCTTAATCTACCTGCTGCACCACTTCAAGGAGCTGTACCAGGGGTTTCTCAGCTTGCTTCCTCCCTTCCTTCTATTCCTACACCAGCTGGACTGTCGAGTGGAGGTCTCCTAGCTCCCACATCTACTGCTCCTACAATTCCTTCTTTTGATACTATCGGTGTTCCAAGTGAATGCTTACTGTTAAAGAATATGTTCGATCCAAAGGATGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAAGATGAGTGCTCTAggtttggaaaaataaaacatatacaCGTGGATAAGAATAGTGCTGGACTTGTCTATTTGCGATTTGATACTACTCAACCGGCAGTGAATGCACAGCGAGCTCTGCATGGGAGATGGTTTGCTGGGAAGATGATCACCGCAAGCTTCATGGTGCCCCAGTCTTATGAAGATAAATTTCCCGAGAgcagata 1817 0.4304 MGFDEYEYLEETVEKPDHKKEKETVNGGNGTVKSEERDRSQRHNVEEKDDDVEHRLKHSKSRDDSDDYERQRENGSSRYRSQSRDRNKEKDQHRSIRDHRDRDRDRDDRYGREGHREQDSNRERDKRDRGNDSKRERERERSRRSRSRSERHRSDLDERDREQSHDRDYRDRERSRDKDYRDKERERELRERDRENRRKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLRGQPVMVKPSEAEKNLVQSTTAVITGSTGLTGPYSGGARRLYVGNLHFSISEVDLRRVFESFGQVELVQLPLDETGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRIIKVSAVTDQSEMTEVGLGGNTGDLDDDEGGGLSLNASSRALLMQKLAASSVAGPFGNSAVNSTGLNLPAAPLQGAVPGVSQLASSLPSIPTPAGLSSGGLLAPTSTAPTIPSFDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEDECSRFGKIKHIHVDKNSAGLVYLRFDTTQPAVNAQRALHGRWFAGKMITASFMVPQSYEDKFPESR 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00065 605 PANTHER CC1-LIKE SPLICING FACTOR 1 601 - -
Bva03g00065 605 Gene3D - 506 605 IPR012677 -
Bva03g00065 605 MobiDBLite consensus disorder prediction 8 216 - -
Bva03g00065 605 CDD RRM1_RBM39_like 218 290 - -
Bva03g00065 605 Gene3D - 315 426 IPR012677 -
Bva03g00065 605 CDD RRM3_RBM39_like 510 592 - -
Bva03g00065 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 287 IPR000504 GO:0003723
Bva03g00065 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 391 IPR000504 GO:0003723
Bva03g00065 605 SUPERFAMILY RNA-binding domain, RBD 210 300 IPR035979 GO:0003676
Bva03g00065 605 MobiDBLite consensus disorder prediction 1 216 - -
Bva03g00065 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 294 IPR000504 GO:0003723
Bva03g00065 605 TIGRFAM SF-CC1: splicing factor, CC1-like family 112 602 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bva03g00065 605 SUPERFAMILY RNA-binding domain, RBD 321 598 IPR035979 GO:0003676
Bva03g00065 605 Coils Coil 183 205 - -
Bva03g00065 605 SMART rrm1_1 512 590 IPR000504 GO:0003723
Bva03g00065 605 SMART rrm1_1 218 290 IPR000504 GO:0003723
Bva03g00065 605 SMART rrm1_1 322 394 IPR000504 GO:0003723
Bva03g00065 605 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 601 - -
Bva03g00065 605 Gene3D - 149 301 IPR012677 -
Bva03g00065 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 398 IPR000504 GO:0003723
Bva03g00065 605 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 414 529 IPR029123 -
Bva03g00065 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 511 594 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00065 Bva-Chr3 498241 506234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00065 218 384 Eukaryotic Initiation Factors Gene Family AT4G34110 29.586 5.51e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00065 K13091 - vvi:100253813 691.804