Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00050 ATGGATTCGCTGAAGAAATCCTTCAAGTCTTATGGGTCTTACAAACATTCCCGAAAGATTTCTTCTTCGGCGGAGAACACAAATATCACACACGAAGAGCTTCCTATTCTCTTTGATCAAGAGGATCGTCGTCATCATTATCATCACCATcgttcttcttctcctccatTAATGTCGAATGCTACTACTTCTAATTCTGACCGGGGAGAGGTTATCGTTAAAATCGACGATGGTGACCCTGCAGGCGCACAGGGAGGCGCTAAGATTTGGAGGGGGTCCAGCTATGATTTCTGGCCCGAAGGTAGCGATAACAAGAAGAATGTGGTTAATGGGCGGGGTGGTAATGGTGACGAAGAGGGTTTTATGTTCCGTCAGGGAGCGGAGGATCCACCTACAAAGCTTATTGGCAATTTCTTATACCAAGAGAAAACCTCCAGTGAAATGTCGCTGGATATGGATTTAGATATGGACGAACTCAAACTCAACCGTAATTTACCTCCGGTGGACGAGTCTCCCGTGATGTCTCCGATGAAGAATCTGGCTTCGAAGGACGTGAAGGTGTCCTTCGAGGAACCTGACTCCAGTGTGCTTGAGGTTGCTAACGAATCCGTTAGGCGAAGGCATAATAAGGATGGACAAGGTGACCAAGAATTTTCGAGACCTCCACATCCGCCGCAGCACGACCGTCGTCAAGCTAATGATGGAGATGGAGAGGTTTTGAGGTGTACCTCAAACCGCTCATATGAAAGGAACAATTCAACGCCGAGGAAGTCTACCTTgttaagaaacaaaactaaGTCAAGATTACACGACCCACCAGAGGAACAGGATCGGAGGTCTGGTCGGCTCCAGAGATCCGGCCAACTGTTCTCGGGGATGCTGGGGAAGAAAGGGGACGATGATGAAGCCGACCCATTTTTAGAAGATGATATACCCGTCGAGTTTAAAAAGAACCAGTTTAGCATATGGGTTTTCCTCGAGTGGTTGAGTTTGGTTTTGATAGTTGGTGCTTTAATATGCACGCTTTGTATTCCTTATATCAGAGATAAGACTCTCTGGAATCTCAAGTTATGGAAATGGGAGGTGATGGTTCTGGTTCTAATTTGTGGACGCTTAGTTTCTGATTGGGTTATCAGGATATTGGTATTCTTTATCGAAAGGAATTTCCTTTTGCGGAAGAGAGTACTCTATTTTGTATATGGTGTGAGGAAGGCAGTTCAAAATTGTTTATGGTTGGGCTTTGTTTTGATTGCTTGGCATATGTTATTTGATAAGAGAGTTGAGACGGAGACTAGAAGTGACTTCCTTGAATATATCACCAAGATCTTGCTCTGTTTCTTGATAGGCACATTGATATGGTTGCTGAAAACTCTTGTGGTTAAGGTTTTGGCTTCTTCTTTCCATGTAAGCACATACTTTGATAGGATTCAGGAGGCActctttaatcaatttgtGATTGAAACACTGTCGGGTCCACCATTGATAGAACTTCAGAAGTCAGAGGAAGAGGAGGAAAGGCTTGCTGATGAGGTTCAGAAGTTGCAGAATGCTGGGATCAATATACCTCCTGACCTGAAAGAAAATGCCTTCTCTCCAATCCACAGTACAAGACTGACGAGGAGCGGAGTGCTACCTAAAAGCCCTTTGCTCAGAAGTGGAAAGTTATCTCACCCACTTTCCAATAGGGCAGACGATGGAATAACAATTGATCACTTGCATAAGCTGAACCCCAAAAATATATCAGCCTGGAATATGAAAAGGTTAATGAATATAGTCCGTCATGGGGCTATTTCTACACTGGATGAACAGATACTTGATTCCGCTCATGGAGATGATAATACCAAACAGATTAGAAGTGAAAATGAGGCTAAAGCAgcagcaaagaaaatatttcacaaTGTTGCTAGGCGGGGGTCCAGATACATATTCCTGGAGGACTTGATGCGTTTTTTGAGAGAAGATGAAGCTGTAAAAGCCATGAATTTCTTTGAAGGAGCATCTGAATCTGGGAAAATCAGCAAATCTGCCTTGAAGAATTGGGTGGTCAATGCTTATAGAGAGAGGAGAGCCCTTTCTTTGTCATTGAATGATACCAAAACGGCAGTGAATAAACTTCATCGCATGCTCAATTTCATAGTCGCCATTGTTGTTGTCGTCATTGCGCTCTTAATATTGGAAATTGCCTCCGgcaaatttcttctcttagTGAGTTCACAGATTGTCGTGGTGGCATTTATATTTGGAAATACCTGCAGGACCATATTTGAAGCAATCATTTTCCTGTTTGTCATGCACCCATTTGATGTGGGAGATAGGTGTGAAATTGAAGGGGTCCAGatgaTTGTCGAAGAAATGAACATATTGacaactatatttttaagacaCGACAATCAGAGGATTATGTACCCTAACAATGTCCTTGCTACTATGAGCATAAACAATTACTATAGGAGTCCTGACATGGGAGATACTATTGAGTTTTACATACATGTAGCTACCCCTCTTGAAAGGATTGCACAGATGAAATACAGAATAGAAAGTTATATTGATAACAAGAAGGAGCACTGGTATCCTGCACCAATAATAGTCTTAAGGGACTTCTACGAACTAAACATGGTAAAAGTGTCAATTTGGCCAACTCATAGAATGAACCACCAAGACATGGTAGAAAGATTGGTCAGAAGATCCCTTTTGATTGAGgagattatcaaaattatcCGGGAGCTCGACATTCAGTACCGTCTCCAGCCTCTTGATGTTAGCATTCGAAGCATGCCTACCACTTCTGAACGGCTTCCACCTAGTTGGGCAACAATCACAAGTACTTG 2828 0.4123 MDSLKKSFKSYGSYKHSRKISSSAENTNITHEELPILFDQEDRRHHYHHHRSSSPPLMSNATTSNSDRGEVIVKIDDGDPAGAQGGAKIWRGSSYDFWPEGSDNKKNVVNGRGGNGDEEGFMFRQGAEDPPTKLIGNFLYQEKTSSEMSLDMDLDMDELKLNRNLPPVDESPVMSPMKNLASKDVKVSFEEPDSSVLEVANESVRRRHNKDGQGDQEFSRPPHPPQHDRRQANDGDGEVLRCTSNRSYERNNSTPRKSTLLRNKTKSRLHDPPEEQDRRSGRLQRSGQLFSGMLGKKGDDDEADPFLEDDIPVEFKKNQFSIWVFLEWLSLVLIVGALICTLCIPYIRDKTLWNLKLWKWEVMVLVLICGRLVSDWVIRILVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGFVLIAWHMLFDKRVETETRSDFLEYITKILLCFLIGTLIWLLKTLVVKVLASSFHVSTYFDRIQEALFNQFVIETLSGPPLIELQKSEEEEERLADEVQKLQNAGINIPPDLKENAFSPIHSTRLTRSGVLPKSPLLRSGKLSHPLSNRADDGITIDHLHKLNPKNISAWNMKRLMNIVRHGAISTLDEQILDSAHGDDNTKQIRSENEAKAAAKKIFHNVARRGSRYIFLEDLMRFLREDEAVKAMNFFEGASESGKISKSALKNWVVNAYRERRALSLSLNDTKTAVNKLHRMLNFIVAIVVVVIALLILEIASGKFLLLVSSQIVVVAFIFGNTCRTIFEAIIFLFVMHPFDVGDRCEIEGVQMIVEEMNILTTIFLRHDNQRIMYPNNVLATMSINNYYRSPDMGDTIEFYIHVATPLERIAQMKYRIESYIDNKKEHWYPAPIIVLRDFYELNMVKVSIWPTHRMNHQDMVERLVRRSLLIEEIIKIIRELDIQYRLQPLDVSIRSMPTTSERLPPSWATITST 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00050 942 MobiDBLite consensus disorder prediction 1 67 - -
Bva03g00050 942 MobiDBLite consensus disorder prediction 264 282 - -
Bva03g00050 942 MobiDBLite consensus disorder prediction 184 283 - -
Bva03g00050 942 MobiDBLite consensus disorder prediction 53 67 - -
Bva03g00050 942 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 931 IPR016688 -
Bva03g00050 942 SUPERFAMILY Sm-like ribonucleoproteins 756 815 IPR010920 -
Bva03g00050 942 Coils Coil 494 517 - -
Bva03g00050 942 MobiDBLite consensus disorder prediction 14 30 - -
Bva03g00050 942 Gene3D - 766 815 IPR023408 -
Bva03g00050 942 Pfam Mechanosensitive ion channel 708 911 IPR006685 GO:0016020|GO:0055085
Bva03g00050 942 MobiDBLite consensus disorder prediction 200 236 - -
Bva03g00050 942 PIRSF Memb_At2g17000 15 942 IPR016688 -
Bva03g00050 942 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 931 - -
Bva03g00050 942 MobiDBLite consensus disorder prediction 238 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00050 Bva-Chr3 372671 377376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00050 66 941 Mechanosensitive Ion Channel Family AT1G78610 55.373 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00050 K22048 - gmx:102665658 1212.98