Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00039 atgaCTCACAGTACTCTCTTACTTTGTCTTgtctctattcttttctcatcTGCCACTGCTTGTGATCGCTGCGTCCATGAAGCCAAGGCTGCCTATTTCTCTAAAGCTTCTGCTCTTTCATCCGGGGCATGTGGTTATGGCTCCTTAGCAATGGAATTAAGCGGTGGACACCTCACAGCCGCTGTGCCTACCTTGTACAAAGATGGAGCTGGATGCGGCGCCTGCTTTCAGATCAGATGCAAGAACCCAACTCTATGCACCAAAGCTGGTACCAGAGTGATTTTGACTGATCTCAATCACAATAATCAAACTGATTTTTTTCTCAGCAGCAGAGCTTTCATGGCTATGGCTCAGACGGGTATGGGTCAGCAAATTTTGAAGCTTGGAATTGTTGACATTGAATATAAGAGGGTACCATGTGAATACAAGAATCAGAATTTGGCGGTGCGCGTAGAAGAATCAAGCAAGAAGCCAGATTACCTTGCAGTTCAATTTTTGTACCAAGGTGGTCAAACAGAGATAGTAGCCGTTGATGTAGCTCAgGTTGGATCATCAAACTGGAGCTTCATGAGCAGAAACAATGGGACAGTGTGGGAGACAAGTAGGGTTCCGGCAGGTGCTTTGCAATTCCGGTTAGTGGTAACAGCAGGGTATGATGGTAAATGGATATGGGCAAAGCAGGTTCTTCCGGCTGATTGGAAACCTGGATCTTTATATGATGCTGGCCTCCAAATAACAGATATTGCACAAGAGGGCTGCTCTCCCTGTGATGATTCCATCTGGTCTTCCTG 791 0.4488 MTHSTLLLCLVSILFSSATACDRCVHEAKAAYFSKASALSSGACGYGSLAMELSGGHLTAAVPTLYKDGAGCGACFQIRCKNPTLCTKAGTRVILTDLNHNNQTDFFLSSRAFMAMAQTGMGQQILKLGIVDIEYKRVPCEYKNQNLAVRVEESSKKPDYLAVQFLYQGGQTEIVAVDVAQVGSSNWSFMSRNNGTVWETSRVPAGALQFRLVVTAGYDGKWIWAKQVLPADWKPGSLYDAGLQITDIAQEGCSPCDDSIWSS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00039 263 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Bva03g00039 263 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Bva03g00039 263 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Bva03g00039 263 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Bva03g00039 263 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Bva03g00039 263 SUPERFAMILY PHL pollen allergen 146 240 IPR036749 -
Bva03g00039 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 241 IPR007117 -
Bva03g00039 263 SUPERFAMILY Barwin-like endoglucanases 11 144 IPR036908 -
Bva03g00039 263 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Bva03g00039 263 PRINTS Major pollen allergen Lol pI signature 60 71 IPR005795 GO:0005576|GO:0019953
Bva03g00039 263 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Bva03g00039 263 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Bva03g00039 263 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576|GO:0019953
Bva03g00039 263 Pfam Lytic transglycolase 60 135 IPR009009 -
Bva03g00039 263 Gene3D - 142 246 IPR036749 -
Bva03g00039 263 PANTHER EXPANSIN-B3 8 258 - -
Bva03g00039 263 SMART dpbb_1 59 135 IPR007112 -
Bva03g00039 263 Gene3D - 8 141 IPR036908 -
Bva03g00039 263 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Bva03g00039 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 145 IPR007112 -
Bva03g00039 263 PANTHER EXPANSIN-LIKE A1-RELATED 8 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00039 Bva-Chr3 291111 293274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00039 18 262 Expansin Gene Family AT4G38400 67.611 3.59e-117 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00039 - - gmx:100819849 446.817