Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00025 ATGGCCACGACGATGGCCGATTTAATTTCCAATTCCCCTGATACAAATACTTTATCAGTATCCAGTTTGATGGGTTCTACGAAGAAGCGCAGCAAGTTGACCAGAATTAGTGAggataatgagaagaagaagaagaagggtaTGAAAGGGACAAAGGTGGAGGAGGACAATGGACCCAAGATTAGCCGGCCATGTAGCGAGTGTGGGAAGAAGTTTTGGTCATGGAAGGCTCTGTTTGGACACATGCGCTGCCATCCTGAACGTCAATGGAACCCAAGGAATATTTATGACGGCAGAGGATCATG 305 0.4262 MATTMADLISNSPDTNTLSVSSLMGSTKKRSKLTRISEDNEKKKKKGMKGTKVEEDNGPKISRPCSECGKKFWSWKALFGHMRCHPERQWNPRNIYDGRGS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00025 101 Pfam C2H2-type zinc finger 64 87 - -
Bva03g00025 101 MobiDBLite consensus disorder prediction 1 30 - -
Bva03g00025 101 MobiDBLite consensus disorder prediction 31 61 - -
Bva03g00025 101 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 20 90 - -
Bva03g00025 101 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Bva03g00025 101 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Bva03g00025 101 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 20 90 - -
Bva03g00025 101 MobiDBLite consensus disorder prediction 1 61 - -
Bva03g00025 101 SUPERFAMILY beta-beta-alpha zinc fingers 64 89 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00025 Bva-Chr3 198179 199267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00025 17 90 C2H2 Transcription Factor Family AT4G35280 56.757 2.72e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva03g00025 zf-C2H2_6 1.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00025 - - qsu:112012858 95.5153