Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00022 ATGAAGaaaaaactcataattttCAATCTCCTTCAGAAGACCCATCTTCTAAAGAACATCGTGGATTGCTTGTATGATGGAGGCACGACAAAAGGGGAAAGGTGTTTCTGTCTCCTTAGAATACATTCAAGAACCGAAAGAAGATTTCACAGTGACAACACACTCAGGGTGGACTACATAACGGGTCGCTCATCAGGTGAGAAGAGACGATACAAGGCAGAGAAGACCATCAGCTTTCAATTTCTTCGACAATACTTTGCAGGAAGCTTGAAAGATGCAGTCAAGAGTATTGGTCTGTGTCCCACGACTCTGAAAAGGATATGCAGACAGCATGGCATTATCAGGTGGCCATCAAGGAAAATTAAGAAGGTGGGGCACTCTTTAAGGAAACTTCAACTTGTGATTGATTCAGTCCAAGGTGCTGAGGGTGCCATTCAGATTGGATCATTCTATACGAGCTTTCCAGATGGTTGGAATTCACGAGATAGAGGTGCTCTTAGAGTAAAAGCTACTTTTGGAGATGAAAAGATCCACTTTAGCTTGCAACAAAATCTGGGTTTCAAAGATCTGCAGTTGGAGATTGCGAGGTGCTTCAACCTAAATGATGTGAGCAACATTGATCTCAAGTACTTGGATGATGATGGTGAGTGGATTCTTTTAACATGTGATGCTGATCTTGAAGAGTGTAAAGACATATATAGATCATCTCTGAGCTGCACCATCAGACTCTCCCTCTTTCAAACTTCACCTCTAAATCTATCAAATACATTTGGAAGCAGCAGCCCATCCTG 791 0.4159 MKKKLIIFNLLQKTHLLKNIVDCLYDGGTTKGERCFCLLRIHSRTERRFHSDNTLRVDYITGRSSGEKRRYKAEKTISFQFLRQYFAGSLKDAVKSIGLCPTTLKRICRQHGIIRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPDGWNSRDRGALRVKATFGDEKIHFSLQQNLGFKDLQLEIARCFNLNDVSNIDLKYLDDDGEWILLTCDADLEECKDIYRSSLSCTIRLSLFQTSPLNLSNTFGSSSPS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00022 263 Pfam PB1 domain 166 247 IPR000270 GO:0005515
Bva03g00022 263 PANTHER PROTEIN NLP8 53 156 IPR045012 GO:0003700
Bva03g00022 263 PANTHER PROTEIN NLP8 162 260 IPR045012 GO:0003700
Bva03g00022 263 SMART PB1_new 165 248 IPR000270 GO:0005515
Bva03g00022 263 Gene3D - 163 250 - -
Bva03g00022 263 Pfam RWP-RK domain 77 124 IPR003035 -
Bva03g00022 263 SUPERFAMILY CAD & PB1 domains 159 250 - -
Bva03g00022 263 ProSiteProfiles PB1 domain profile. 165 248 IPR000270 GO:0005515
Bva03g00022 263 ProSiteProfiles RWP-RK domain profile. 63 144 IPR003035 -
Bva03g00022 263 PANTHER PROTEIN NLP2 53 156 - -
Bva03g00022 263 PANTHER PROTEIN NLP2 162 260 - -
Bva03g00022 263 CDD PB1_NLP 166 247 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00022 Bva-Chr3 194689 196021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00022 161 263 NLP Transcription Factor Family AT2G17150 55.340 1.37e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Bva03g00022 PB1 9.7e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00022 - - gmx:100796074 283.108