Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00019 ATGGATAACGAGGTTCTAGAGTTTGATATTGGGTtgggaggaggaggagaaggaGGTGGCGTCAGCGATGATGGCGGGGACATTGAGCACCAAATTGATGAGGACGAGTTGGCTGATAGCCCTCCTCTTAGCAGTGGTGGTGGGGGTGCTTCTGGAGCCACTGCTGGTGGTGAAATATATCTTCCTGAGGGTGATATCTTGGATCTTGAACCTGCTGAGGGCATGGAATTTGAGTCTGAGGAGGCTGCCAAGGCCTTCTATAACTCCTATGCTCGTCGTGTTGGCTTCAGTACTCGTGTTAGCTCATCCCGCCGTTCCAGGCGAGATGGAGCTATTATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTCCGCAACTTGAATGAAAAACGCACCAAGGATAGAGAGATCAAGCGCCCTCGAACCATTACCAGAGTGGGATGCAAAGCATCTTTGTCTGTCAAAATGCAAGATTCTGGCAAGTGGGTTGTGTCTGGATTTGTTAAAGAACATAATCATGAACTGGTTCCCCCTGATCAAGTGCATTGCCTTCGTTCTCACAGGCAAATATCAGGAGCTGCTAAAACCTTGATTGATACTTTACAGGCTGCTGGACTGGGTCCTCGTAGAATCATGTCTGCACTCATCAAAGAGTATGGTGGGATTAGCAAAGTTGGTTTCACAGAGGTTGACTGTAGAAATTACATGAGGAATAACCGGCAGAGAAGTTTAGAAGGGGACATTCAAGTTGTTTTGGATTATTTGAGGCAAATGCATGCtgaaaaccctaattttttCTATGCTGTGCAAGGTGATGAGGATCAGTGCATGAACAATGTTTTCTGGGCTGATCCAAAGGCAAGGATGAATTATACATACTTTGGTGATACCGTAACTTTTGACACTACCTATCGATCCAATAGGTATCGGTTACCCTTTGCTCCCTTCACTGGTGTAAACCATCATGGACAGCCTGTTCTCTTTGGTTGTGCTTTCCTAATAAATGAATCAGAAGCATCATTTGTATGGCTTTTCAAAACATGGCTAATGGCCATGTCTGGACGCCCTCCAGTGTCAATAACAACTGATTATGATTCTGTGATTCAATCAGCGATCACACAAGTATTCCCTGAGGCCCGTCACCGCTTCTGCAAGTGGCACATCTTTAAGAAATGTCAGGAAAAATTATCCCACATTTTCCTTAAACATCCAAATTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGtcaattgaagaatttgagtCTTGCTGGTCAACACTTCTTGATAGATATGATCTCAGGGACCATGAATGGCTTCATGCAATATATTCTGCACGCAGGCAGTGGGTACCTGTATATTTGCGGGACACATTCTTTGCGGAAATGTCCATAACCCAGCGTAGTGATAGCATGAACTCGTACTTTGATGGCTATGTGAATGCTTCAACAAATTTGAATCAGTTCTTTAAGCTGTATGAAAAAGCACTGGAAAGTCGCAATGAGAAAGAAGTGAGAGCAGATTATGAAACAATGAATACTTTGCCAGTATTAAAGACCCCATCTCCAATGGAGAAACAAACATCCGAGCTCTACActagaaaaattttcatgagGTTCCAAGAGGAGTTAGTTGGGACATTAACGTTCACTGCAACCAAGGCTGAGGATGATGGGGAGGTCATTACATATAATGTAGCAAAATACCAAGAGGTCCATAAAGCATACTATGTTAAATTCAATGTGTTGGAGATGAAAGCCTCTTGTAGTTGCCAAATGTTTGAATTCTCAGGCCTTCTTTGCAGACATGTTTTGGCTGTATTCAGAGTAACCAATGTGCTTACTCTCCCTTCTCATTACATTTTGAAACGTTGGACAAGAAATGCTAAGAGCAATGTAATATTAGAAGAACATTCTAGCGATGTATATACTTACTATTTGGAATCTCATACAGTTAGATATAATACCCTTCGTCACGAGGTCTTTAAACTGGTTGATGAAGGGACGAAGTCTCCTGAAGTTTATGATGTGGCAATGAATGCTTTACAAGAAGCCGCAAAACGAGTTGCTCAGGCAGTTAAAAGCGAGCAGAGAATCCCCATTAGCAATGGAAAAGTTAGGAGTTACTTGCTGAGTGATGACAATCTTGCAAATCACACAAGTGGGTGCCGTGAAGAAAGCTTTGGCCAACATATGTCCGAGGATGATATGGACAAGAATATTACAGAACTTATGAATGAACTTGAGTGTGCAAGTCGAAAGTGTGAAATTTATCGTTCCAACCTGCTTTCTGTTTTGAAAGCTGTTGAGGATCATAAGTTAGAGTTGTCAATTAAGGTGCAAAACATCAAGCTTAGCATGAAAGATGGTCTCTG 2381 0.4116 MDNEVLEFDIGLGGGGEGGGVSDDGGDIEHQIDEDELADSPPLSSGGGGASGATAGGEIYLPEGDILDLEPAEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGLGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQVVLDYLRQMHAENPNFFYAVQGDEDQCMNNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPVSITTDYDSVIQSAITQVFPEARHRFCKWHIFKKCQEKLSHIFLKHPNFEAEFHKCVNLTESIEEFESCWSTLLDRYDLRDHEWLHAIYSARRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEKALESRNEKEVRADYETMNTLPVLKTPSPMEKQTSELYTRKIFMRFQEELVGTLTFTATKAEDDGEVITYNVAKYQEVHKAYYVKFNVLEMKASCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEEHSSDVYTYYLESHTVRYNTLRHEVFKLVDEGTKSPEVYDVAMNALQEAAKRVAQAVKSEQRIPISNGKVRSYLLSDDNLANHTSGCREESFGQHMSEDDMDKNITELMNELECASRKCEIYRSNLLSVLKAVEDHKLELSIKVQNIKLSMKDGL 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00019 793 Coils Coil 736 763 - -
Bva03g00019 793 Pfam MULE transposase domain 298 391 IPR018289 -
Bva03g00019 793 Pfam SWIM zinc finger 584 612 IPR007527 GO:0008270
Bva03g00019 793 Pfam FAR1 DNA-binding domain 86 177 IPR004330 -
Bva03g00019 793 MobiDBLite consensus disorder prediction 1 57 - -
Bva03g00019 793 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 766 IPR031052 GO:0006355
Bva03g00019 793 SMART 26again6 589 616 IPR006564 GO:0008270
Bva03g00019 793 ProSiteProfiles Zinc finger SWIM-type profile. 578 614 IPR007527 GO:0008270
Bva03g00019 793 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 44 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00019 Bva-Chr3 165888 170173 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Bva03g00019 MULE 3.5e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00019 - - gmx:100793442 1363.21