Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00013 ATGGGCAACACATGCCGCGGATCTTTCAAAGCAAAACATTTTCAGGGCTACAGCCAGCCCGAAGAGCATTCCACTACCCATTCCAAGCGCAACAATCCTTCTGATAGCTCAGACTATTCCCCATCCAGCTTGAACACTAAGGAAAACCTCAATAATAAAGATACTAGCAAAAGTTCTTACTCAGATAACAACTATAACACTAATCTACCGTTTGTTATTCCGCCTAAAAAAGACGCAGCCATGCGGCGAGGTGGTGATTACCAAGCATATTATGTATTGGGTCATAAGACTCCCAACATTCGTGATCTTTACACTCTAGGCCGTAAGTTAGGACAAGGACAGTTTGGGACTACTTATTTATGCACTGAGAATTCAACGGGCATTGAATATGCTTGCAAATCTATATCTAAGAGGAAGTTGATCTCCAAGGAGGATGTGGAGGATGTAAGGAGGGAAATTCAGATAATGCACCATTTAGCAGGTCACAAGAATATTGTCACCATTAAGGGTGCTTATGAGGATCCCTTGTACGTGCATATTGTCATGGAGCTTTGCTCTGGAGGAGAGTTGTTTGACCGCATCATCCAGAGGGGCCACTACAGTGAGAGGAAGGCTGCAGAATTGACCAAAATTATTGTCGGAGTTGTTGAGGCATGTCATTCTCTAGGGGTTATGCATAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTCAATAAGGatgatgatttttctcttaaagcAATTGACTTTGgcctttctgttttcttcaaaCCAGGTCAAACTTTCACTGATGTTGTTGGAAGCCCATATTATGTTGCTCCTGAGGTTCTAAACAAGCATTATGGGCCAGAAGCAGATGTATGGACAGCAGGTGTCATACTCTACATCTTGCTTAGTGGGGTGCCACCTTTTTGGGCAGAAACCCAACAGGGAATATTTGAAGCTGTGTTGAGGGGACATATAGATTTTGATTCAGACCCGTGGCCCCTAATATCTGATAGTGCAAAAGATCTAATCCGGAAGATGCTATGTTCTCAGCCTTCAGAACGGTTGACTGCTCATGAAGTGTTATGTCATCCATGGATTTGTGAAAATGGAGTTGCTCCTGATAGGTCGTTGGACTCTGCTGTCCTTTCTCGTCTCAAACAGTTCTCTGCAATGAATAAGCTAAAGAAGATGGCTTTGCGGGTAATTGCTGAAAGTCTATCTGAGGAGGAGATTGCTGGCTTGAGAGAAATGTTTAAGGCTATGGATACTGATAATAGCGGTGCAATCACTTTTGATGAACTCAAAGCTGGTTTAAGAAGATATGGGTCTACCCTCAAAGATACAGAGATACGTGATCTTATGGATGCGGCTGATGTGGACAACAGCGGAACTATAGATTATGGGGAGTTTATTGCTGCAACAGTTCATCTTAACAAATTAGAGCGTGAGGAACATCTTGTGGCAGCATTTCGATATTTTGATAAGGATGGAAGTGGTTATATTACGGTTGATGAACTTCAACAAGCTTGTACAGAACATAACATGACTGATGTTTTTCTTGAAGATATTATTAGGGAAGTGGATCAAGATAATGATGGAAGGATCGATTATGGCGAATTTGTTGCCATGATGACAAAAGGTAATGGTGGAATTGGAAGGAGGACTATGCGCAACAGTCTTAATTTGAGCATGAGAGAGGCACCGGGTGCTCTTTA 1703 0.414 MGNTCRGSFKAKHFQGYSQPEEHSTTHSKRNNPSDSSDYSPSSLNTKENLNNKDTSKSSYSDNNYNTNLPFVIPPKKDAAMRRGGDYQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTGIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYSERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQTFTDVVGSPYYVAPEVLNKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFEAVLRGHIDFDSDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRSLDSAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMDAADVDNSGTIDYGEFIAATVHLNKLEREEHLVAAFRYFDKDGSGYITVDELQQACTEHNMTDVFLEDIIREVDQDNDGRIDYGEFVAMMTKGNGGIGRRTMRNSLNLSMREAPGAL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00013 567 Pfam Protein kinase domain 104 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00013 567 ProSiteProfiles EF-hand calcium-binding domain profile. 516 546 IPR002048 GO:0005509
Bva03g00013 567 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Bva03g00013 567 Gene3D Transferase(Phosphotransferase) domain 1 190 386 - -
Bva03g00013 567 SUPERFAMILY Protein kinase-like (PK-like) 88 384 IPR011009 -
Bva03g00013 567 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Bva03g00013 567 Pfam EF-hand domain pair 480 540 IPR002048 GO:0005509
Bva03g00013 567 Pfam EF-hand domain pair 410 470 IPR002048 GO:0005509
Bva03g00013 567 MobiDBLite consensus disorder prediction 1 68 - -
Bva03g00013 567 CDD STKc_CAMK 104 361 - -
Bva03g00013 567 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Bva03g00013 567 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 552 - -
Bva03g00013 567 SUPERFAMILY EF-hand 386 543 IPR011992 -
Bva03g00013 567 SMART serkin_6 104 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00013 567 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Bva03g00013 567 Gene3D Phosphorylase Kinase; domain 1 106 189 - -
Bva03g00013 567 Gene3D - 387 546 - -
Bva03g00013 567 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Bva03g00013 567 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Bva03g00013 567 ProSiteProfiles Protein kinase domain profile. 104 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g00013 567 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Bva03g00013 567 MobiDBLite consensus disorder prediction 30 68 - -
Bva03g00013 567 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 33 552 - -
Bva03g00013 567 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Bva03g00013 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Bva03g00013 567 SMART efh_1 481 509 IPR002048 GO:0005509
Bva03g00013 567 SMART efh_1 409 437 IPR002048 GO:0005509
Bva03g00013 567 SMART efh_1 445 473 IPR002048 GO:0005509
Bva03g00013 567 SMART efh_1 515 543 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00013 Bva-Chr3 128732 137408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00013 1 563 EF-hand Containing Proteins AT2G17290 82.801 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bva03g00013 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00013 K13412 - tcc:18608372 1006.13