Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00009 ATGCTGCTCAATGTACCAATCGCTTGCTGTGCCTCTCATTGTAACCCCTCTAAAATTTTAGAAAGTTCACCCATGAGTTCaggatttattttaactatgaATCTCGTATGGCTTGCATCGACATGCATTCTCTTGCTTGGAGTATCAACTGAAGGATCTTTGAGGCCTGATATCATCAAAATTGGTGCTATTTTCACGTTTAAAACTATTAATGGACAAGTTTCTAAAATCGCCATCAAAGCTGCTGAGAAAGATGTGAATTCCGATCCTCACATCCTTGGTGGACGTAAATTGTCTATAAGCATGCACGACTCCAACTTCAGTGGTTTCCTTGGCTTTGTTGGGGCACTCAAGTTCTTGGAAACTGACACAGTAGCCATAATTGGTCCACAAAGTTCAGTAATGGCCCGTGTACTCTCGCATCTTGCTAAAGAACTTCTTGTTCCTCTATTGTCATTTACAGCTCTGGATCCAACCTTGTCACCCCTTCAGTATCCTTATTTTGTCCAAACAGCACCCAATGATATGTTTCAGATGACTGCAATTGCAGACATGGTTAGTTATTTTGGTTGGAGAGAGGTCATTACTATTTTCAGTGATGATGATCAGAGTCGTAATGGTATCATGATATTAGGTGATAAACTTGCAGAGAAACGCTGCACCGTATCTTACAAAGCAGCGCTCCCTCCTGATCCAACAGCCACTCAAAGTGATGTTACTGCTCAGTTGATGAAGGTTCAAAGTATGGAAGCTCGAGTAATTGTTCTACACACTTTCTCCAGAACAGGTCTCTTGGTTTTTAATGTAGCTAAGAAACTAGGTATGATGAGGAAAGGGTATGTCTGGATAGTTACTGATTGGTTATCGACTGTTTTAGATTCAAATTCACCTCTACCtgcaaatatttcaaactcAATCCAAGGAGTTATAACGTTTCGCCATCACACTCCggaatcaaaaagaaaacaagccTTTATGTCAAGGTGGAAAGAGATAAGTAAAGGCTCAATCGGGTTGAATCCGTATGGACTCTATGCTTATGATTCTGTTTGGATAATTGCTCATGCTTTGAGACTATTTTTGGATCAGGGCGCTAACTTTTCATTCTCTAATAATACAAACTTAAGTGGTATGAAGGAAGTGGCTATAGATCTTGGTGCATTGAGCGTTTTTAATGGAGGGAAGCAGTTACTTGATAATATCTTGCACACTAATATGACTGGATTAACAGGAACAGTCCAATTTGGTTCAAATAGATTCCCTCCACATCCATCATATGACCTCCTTAATGTAATTGCTCCAAGTTACAGGAAGATTGGATACTGGTCTAACTATTCTGGCCTTTCTGTTACTACTCCAGAGAAACTTTATGCGAAGCCTGCCAACCGTTCAATTTCAAACCAGCAACTACACAGTGTGACATGGCCTGGGGGTACAACTGAAAAGCCTCGAGGATGGGTGTTTCGCGACAATGGAAGGCAGCTGAGAATTGGAGTTCCTAACCGAGTTAGTTATCAGGACATTATCTCACAAATGAATGGCACAGTTCAAGGATATTGCATAGATGTATTTCTGGCTGCCATTAAATTGCTTCCATATGCAGTTCCATATAAGTTCATTCCATTTGGAGACGGACACAAGAACCCAACCTATTATGACCTTGTCAATATGATTAATTCTGGTGTTTTTGATGCTGCAGTTGGTGACATTGCTATTGTCACTGATCGAACAAGGATTGCTGATTTTACTCAACCATTTATAGAGTCAGGGCTAGTTGTGGTCGCTCCAGTAAGAAGGTTGAAGTCAAGTGCTTGGGCTTTCTTGCGACCGTTCACTCCATTAATGTGGGGTGTCACAgcactcttttttcttgttgttGGAGCCATTGTGTGGATTCTTGAACATAGAAAAAATGAGGAGTTCCGGGGCCCTCCTAAGAAACAAATAGTCACAATTCTTTGGTTTAGCTTTTCCACCATGTTCTTTGCACACAGAGAAAACACAGTTAGTACACTAGGTCGAAGTGTGCTTATCATCTGGCTTTTTGTGGTTCTGATAATAAATTCAAGCTACACTGCAAGCTTGACATCAATCCTCACTGTGCAACAGCTGTCCTCACCCATCACAGGAATCAATACTTTGATAACTAGCAATGAACTTATAGGATTTCAAGTGGGGTCATTTGCTGAAAACTATCTAGCTGAGGAACTCAACATTCCAAAACATAGACTTGTTCCTCTTGGTTCGCCAGAAGAATATGCTATTGCCCTTGAGAAGGGAACTGTTGCTGCTGTGGTAGATGAACGGCCATATGTAGAACGCTTCCTGTCAGACCACTGCAAATTCTCAATTAGGGGCCAAGAGTTCACTAAAAGTGGATGGGGATTTGCATTTCCAAGGGACTCTCCCATATCCATCGATATGTCAACTGCCATTTTGACTCTGTCTGAAAATGGCGAGCTccaaaaaattcatgaaaggTGGCTTTCAGAAAACGCTTGTGGTTCCCAGAGTGCAGAGGACGAATCTGAGCAGCTTCGCTTAGAAAGCTTCTGGGGCCTGTTTCTAATCTGTGGGATAGCATGTTTTCTGGCTCTCGTTATCTACTTCTGCAAGATGGTACGCCAATTTAGCCAACATTTTCCTGAAGAAGCTTATCCCTCTAACAGTGCCAGCTCACATTCTGTACGCATCCAGACATTCctaaattttgttgatgaaaaagaaaatgtatcccaaagaaacttaaaaaggaaaagtagaGATATTTCACTAAATACTTACTCGGAAGATCACAACATATCCAAGAGATCACAAATGAAGGAGCTACATTATGGTTA 2840 0.394 MLLNVPIACCASHCNPSKILESSPMSSGFILTMNLVWLASTCILLLGVSTEGSLRPDIIKIGAIFTFKTINGQVSKIAIKAAEKDVNSDPHILGGRKLSISMHDSNFSGFLGFVGALKFLETDTVAIIGPQSSVMARVLSHLAKELLVPLLSFTALDPTLSPLQYPYFVQTAPNDMFQMTAIADMVSYFGWREVITIFSDDDQSRNGIMILGDKLAEKRCTVSYKAALPPDPTATQSDVTAQLMKVQSMEARVIVLHTFSRTGLLVFNVAKKLGMMRKGYVWIVTDWLSTVLDSNSPLPANISNSIQGVITFRHHTPESKRKQAFMSRWKEISKGSIGLNPYGLYAYDSVWIIAHALRLFLDQGANFSFSNNTNLSGMKEVAIDLGALSVFNGGKQLLDNILHTNMTGLTGTVQFGSNRFPPHPSYDLLNVIAPSYRKIGYWSNYSGLSVTTPEKLYAKPANRSISNQQLHSVTWPGGTTEKPRGWVFRDNGRQLRIGVPNRVSYQDIISQMNGTVQGYCIDVFLAAIKLLPYAVPYKFIPFGDGHKNPTYYDLVNMINSGVFDAAVGDIAIVTDRTRIADFTQPFIESGLVVVAPVRRLKSSAWAFLRPFTPLMWGVTALFFLVVGAIVWILEHRKNEEFRGPPKKQIVTILWFSFSTMFFAHRENTVSTLGRSVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGINTLITSNELIGFQVGSFAENYLAEELNIPKHRLVPLGSPEEYAIALEKGTVAAVVDERPYVERFLSDHCKFSIRGQEFTKSGWGFAFPRDSPISIDMSTAILTLSENGELQKIHERWLSENACGSQSAEDESEQLRLESFWGLFLICGIACFLALVIYFCKMVRQFSQHFPEEAYPSNSASSHSVRIQTFLNFVDEKENVSQRNLKRKSRDISLNTYSEDHNISKRSQMKELHYG 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00009 946 CDD PBP1_GABAb_receptor_plant 60 450 IPR044440 -
Bva03g00009 946 SUPERFAMILY Periplasmic binding protein-like I 54 486 IPR028082 -
Bva03g00009 946 PANTHER GLUTAMATE RECEPTOR 3.6 46 942 - -
Bva03g00009 946 PIRSF IGluLR_plant 28 944 IPR017103 -
Bva03g00009 946 Gene3D - 77 423 - -
Bva03g00009 946 Gene3D - 605 733 - -
Bva03g00009 946 Gene3D - 758 794 - -
Bva03g00009 946 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 942 - -
Bva03g00009 946 CDD GluR_Plant 493 829 - -
Bva03g00009 946 Gene3D - 174 448 - -
Bva03g00009 946 Pfam Ligand-gated ion channel 831 862 IPR001320 GO:0015276|GO:0016020
Bva03g00009 946 SUPERFAMILY Periplasmic binding protein-like II 472 832 - -
Bva03g00009 946 SMART GluR_14 494 831 IPR001320 GO:0015276|GO:0016020
Bva03g00009 946 Gene3D - 795 828 - -
Bva03g00009 946 Gene3D - 489 604 - -
Bva03g00009 946 Pfam Bacterial extracellular solute-binding proteins, family 3 513 830 IPR001638 -
Bva03g00009 946 Pfam Receptor family ligand binding region 77 431 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00009 Bva-Chr3 80232 86629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00009 53 929 Ion Channels AT2G17260 63.046 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00009 K05387 - qsu:112010597 1358.58