Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02642 ATGGATGGCATTCATGCGGGTGATTCTCGTATACACATGAGTGATGCACAACATCCTATGCCTGTGCAATATGTGCAAGAACACGAGCATCATGGATTGCACCACATGAGTAATGGAAATGTCATGGAGGAGGATCATAATAATGGCGGTGATAATAATGGTGGAAGTGAGAGCATGGAAGGAGACGTTCCGTCCAATCATGGAAATCTCCCTGACGATCATACTGCAATGATGGAGGCTGAAGGTGACGGTGGGGAGCAGCTAACTCTGTCTTTTCAGGGCCAGGTTTACGTATTTGACTCTGTGTCACCCGAAAAGGTTCAAGCTGTACTATTGTTATTGGGGGGGCGTGAAATACCTCCAACTATGCCTACCATCCCAGTAGCCCCTCACCATAATAATCGGGGATTTGCTGGTACTCCACAGAAATTCAGCGTCCCACAGAGATTAGCCTCATTGATTAGATTTCGTGAGAAGCGGAAAGAAcgaaattttgacaaaaaaatccGTTATACTGTTCGTAAAGAAGTAGCTTTGAGGATGCAAAGAAATAAGGGTCAGTTTACTTCTTCCAAGTCAAGTAATGATGATTCTGCTTCAGCTGCAACAAACTGGGGGACGAGTGAAAGCTGGTCATCAGACAATAATGGATCACAACAGCAGGATATCGTTTGTAGGCACTGTGGCATCAGCGAGAAGTGCACACCAATGATGCGGCGTGGGCCTGAAGGGCCAAGGACCCTCTGCAATGCATGTGGACTCATGTGGGCAAACAAGGGAACTCTGAGGGACCTATCTAAGGCGGCGGCAGCACCCTTGCCTGTACCTCCTAATTCTTCTTCATTAAACAGGAATGAGcagaacaaaaattttgaggCCAACCAGATGGTTGTTGGAGTAGCGGGAGATGTTGATGGCTCATCGTGAGACTTGTCTTTAGATCTAGTTgagtattattattgtattgtaAGGGCTGGGCGGGTTTTCGTGAAAATGCTGACGTTGGCATTCTATTCTGTATTGCTTTGTAACATACAGCTAAGTCTCTGTTTCTGTCTCTGTCCGTctgctttctctttcttccccAAATTTGGTTGGTTTCTAGTTCAGTATGTTTCAGTCCTCCACCCCCT 1133 0.4342 MDGIHAGDSRIHMSDAQHPMPVQYVQEHEHHGLHHMSNGNVMEEDHNNGGDNNGGSESMEGDVPSNHGNLPDDHTAMMEAEGDGGEQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPTIPVAPHHNNRGFAGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSSNDDSASAATNWGTSESWSSDNNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAAAPLPVPPNSSSLNRNEQNKNFEANQMVVGVAGDVDGSSDLSLDLVEYYYCIVRAGRVFVKMLTLAFYSVLLCNIQLSLCFCLCPSAFSFFPKFGWFLVQYVSVLHP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02642 376 Gene3D - 215 272 IPR013088 GO:0006355|GO:0008270
Bva02g02642 376 PANTHER GATA TRANSCRIPTION FACTOR 28 6 294 - -
Bva02g02642 376 MobiDBLite consensus disorder prediction 36 79 - -
Bva02g02642 376 Pfam GATA zinc finger 225 261 IPR000679 GO:0006355|GO:0043565
Bva02g02642 376 ProSiteProfiles CCT domain profile. 149 191 IPR010402 GO:0005515
Bva02g02642 376 ProSiteProfiles GATA-type zinc finger domain profile. 219 267 IPR000679 GO:0006355|GO:0043565
Bva02g02642 376 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Bva02g02642 376 SMART tify_2 81 116 IPR010399 -
Bva02g02642 376 MobiDBLite consensus disorder prediction 184 218 - -
Bva02g02642 376 MobiDBLite consensus disorder prediction 42 63 - -
Bva02g02642 376 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 271 - -
Bva02g02642 376 ProSiteProfiles Tify domain profile. 81 116 IPR010399 -
Bva02g02642 376 Pfam CCT motif 149 191 IPR010402 GO:0005515
Bva02g02642 376 CDD ZnF_GATA 224 267 IPR000679 GO:0006355|GO:0043565
Bva02g02642 376 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Bva02g02642 376 Pfam tify domain 86 115 IPR010399 -
Bva02g02642 376 PANTHER GATA TRANSCRIPTION FACTOR 28 6 294 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02642 Bva-Chr2 24452657 24456867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02642 1 307 Tify Gene Family AT1G51600 59.032 6.09e-128 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva02g02642 CCT 1.2e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02642 - - pvu:PHAVU_008G254600g 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02642 02 24452657 24456867 Bva02g02642 02 24452657 24456867 ECH