Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02613 ATGAAGCTCACTGTGAAGACTTTGAAAGGAAGCCACTTCGAAATCAGTGTTCAACCCATCGATACTGTTATGGCTGTCAAAAAGAATATCGAAGATgtacaaggaaaaaataattatccatGTGGACAACAATTACTGATTCACAATGGCAAGGTGTTGAAAGATGAAACTACACTAGCTGACAACAAGGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGCaagAGCAAAACTTTGGGTTCTTCTGGGGCTTCATCCACTCAGCCTACCAGTAGTCCACCTACTACTGTATCAACGTCAAATCCAACTCCTGCTCCTGAACCTCCAGTACAAACAGAGGCTGCAAAAGACAGTACATCTGCCACAGACAGCACGACTGCAAGCGCTTTGCCTACAGATGATACTTATGGTCAAGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGGGGCAGCTGGGACAGAGAAACAGTTACTCGTGCACTTCGGGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTACTCAGGAATTCCTGAAGCAGCAGAAGTTGCTGTACCAGTTGCTCATTACCCATCTAGTCAAAATGCTGAAATAGGGGGGCCAACTGCTGGAGCTGTTTCTGGGGGACCTAACTCATCTCCCTTAAATATGTTTCCGCAGGAGACAATTTCTGGTACTGGTGCTGGTGCTGGACTTGGATCTCTTGACTTCCTTAGAAACAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAACCCACAAATTCTACAGCCCGTGCTTCAGGAGCTTGGAAAGCAGAATCCCCATCTTTTAAGACTAATTCAAGAGCATCATGCTGAGTTCCTCCAGTTAATAAATGAACCTGTTGATGGTTCTGAAGGAGATATATTTGACCAACAAGAGCAAGACATGCCGCATGCCGTCAATGTTACTCCAGCTGAGCAGGAGGCGATTGGAAGGCTGGAGGCGATGGGATTTGATAGAGCCTCAGTGATAGAGGCATTTTTGGCTTGTGATCGTGATGAGCAATTGGCAGCTAACTACTTATTGGAGAATGCTGGGGATTTTGAGGATTG 1127 0.4437 MKLTVKTLKGSHFEISVQPIDTVMAVKKNIEDVQGKNNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSSGASSTQPTSSPPTTVSTSNPTPAPEPPVQTEAAKDSTSATDSTTASALPTDDTYGQAASNLVAGSNLEQTIQQIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHYPSSQNAEIGGPTAGAVSGGPNSSPLNMFPQETISGTGAGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLINEPVDGSEGDIFDQQEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02613 375 Gene3D - 143 193 - -
Bva02g02613 375 SUPERFAMILY XPC-binding domain 247 313 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bva02g02613 375 TIGRFAM rad23: UV excision repair protein Rad23 1 374 IPR004806 GO:0006289
Bva02g02613 375 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bva02g02613 375 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 148 191 IPR015940 -
Bva02g02613 375 MobiDBLite consensus disorder prediction 80 99 - -
Bva02g02613 375 Gene3D - 1 80 - -
Bva02g02613 375 Gene3D - 240 306 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bva02g02613 375 SUPERFAMILY UBA-like 310 372 IPR009060 GO:0005515
Bva02g02613 375 SMART CBM 248 291 IPR006636 -
Bva02g02613 375 SUPERFAMILY Ubiquitin-like 1 87 IPR029071 -
Bva02g02613 375 PRINTS DNA repair protein Rad23 signature 342 356 IPR004806 GO:0006289
Bva02g02613 375 PRINTS DNA repair protein Rad23 signature 325 341 IPR004806 GO:0006289
Bva02g02613 375 PRINTS DNA repair protein Rad23 signature 357 372 IPR004806 GO:0006289
Bva02g02613 375 PRINTS DNA repair protein Rad23 signature 276 298 IPR004806 GO:0006289
Bva02g02613 375 CDD UBA1_Rad23_plant 144 193 - -
Bva02g02613 375 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 329 369 IPR015940 -
Bva02g02613 375 SMART uba_6 331 368 IPR015940 -
Bva02g02613 375 SMART uba_6 150 190 IPR015940 -
Bva02g02613 375 Pfam UBA/TS-N domain 331 366 IPR015940 -
Bva02g02613 375 Pfam UBA/TS-N domain 150 188 IPR015940 -
Bva02g02613 375 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 374 - -
Bva02g02613 375 Pfam XPC-binding domain 250 305 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bva02g02613 375 SUPERFAMILY UBA-like 147 198 IPR009060 GO:0005515
Bva02g02613 375 SMART ubq_7 1 75 IPR000626 GO:0005515
Bva02g02613 375 MobiDBLite consensus disorder prediction 114 135 - -
Bva02g02613 375 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bva02g02613 375 MobiDBLite consensus disorder prediction 80 135 - -
Bva02g02613 375 CDD Ubl_Rad23 1 74 - -
Bva02g02613 375 Gene3D - 322 370 - -
Bva02g02613 375 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02613 Bva-Chr2 24314514 24318961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02613 1 75 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 8.29e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02613 K10839 - tcc:18596343 561.607