Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02608 ATGATGAATGGTTGCCAAAAATCTTCCATTTCCAGACAGTCATACAATTCTCTCTATGTCAATCCCCTCAATGAGCTCAGGCATAGCCGTAGCTGCAGTGACTATGGCTGCTTAGCCTCCAAAGGTGATGACTTTGAAGATTTCAGGCACCGAGACTGGAAAGTTCTAACTGATAATAAAGAGAATGCTCCTCCCAGCAATTATGAAAATGCCGTCACTGGTGACAAAGAGAACGCAAAACCCGTAAATGGGTCTGCTGATGCGCCCAAACAGTTCTCAAAGTCTAAGTCTCTGTCCACAGACAGGATTTTGAAACCTTCCTCTCTTGAGTACTGTATGCAAATAAACGAGCCCGAAAAGGCTTTTAGGTTGAAGTTATTGGATCCCACTGAATCGGAGAATTCGAGCTCATTGAATATTTGGGACTACTCTGATTCAGAAGCAGCTCCGGCTTCGTCCTGGTCTACACTGCCTAATAAGTCTTTGATCTGTAGACCATTGCCTATAGACATTGGAAAGTGTACTTGTATTATTGTGAAGGAAGCGACACCAGAAGGACTCTCCGGGGGCACTATGTTCTCCCTTTATACCTACGAAGGCCAGGGAAGGCAGAATAGGAAACTAGCTGTGGCTCACCACAAGAGGCGAAATGGAAGATCTCAGTTCACCGTAGCTCAGAATGTAAAAGGACTGTTAATGGCCAATTCAGACGATAGTTTTCTTGGGACTGTAACAGCTAACATCATGGGTTCAAAATACAACATATGGAATCAGGGATATCGGTATGATTCCCATAGTAAACAGCCAAAGTCACTTCTTGCTGTTGTAGCATATGTACCAACAGTAACTACATGTACAGGAAGTTACAGAAGCATGAGGGCTTATATACCCAAGCATCAATCTATGTCGTTGTCGCTAAAGAATTCAACTCAGtTACAACATGGTAAAGGACTGCCCATGGATTGGGAGGGAAAATTGGACAAAGTTCATCAACTATTCACAAGGGTTCCGCTTTACAACAAGATTTCAAAGCAATATGAACTTGACTTTAGAGATAGAGGAAGAGCAGGTCTACGAAACCAAAGATCGATAAAAAATTTCCAGCTGACTCTGGAGGAGAATGGAAGGCAAACAATTCTGCAACTAGGTAGAGTTGCGAAATCGAAGTTTGTTATGGATTACAGGTATCCTTTGACAGGTTACCAGGCGTTTTGCATATGTTTGGCTTCTATTGATCCAAAGATTTGCTGCACCGTGTA 1259 0.4273 MMNGCQKSSISRQSYNSLYVNPLNELRHSRSCSDYGCLASKGDDFEDFRHRDWKVLTDNKENAPPSNYENAVTGDKENAKPVNGSADAPKQFSKSKSLSTDRILKPSSLEYCMQINEPEKAFRLKLLDPTESENSSSLNIWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGKCTCIIVKEATPEGLSGGTMFSLYTYEGQGRQNRKLAVAHHKRRNGRSQFTVAQNVKGLLMANSDDSFLGTVTANIMGSKYNIWNQGYRYDSHSKQPKSLLAVVAYVPTVTTCTGSYRSMRAYIPKHQSMSLSLKNSTQLQHGKGLPMDWEGKLDKVHQLFTRVPLYNKISKQYELDFRDRGRAGLRNQRSIKNFQLTLEENGRQTILQLGRVAKSKFVMDYRYPLTGYQAFCICLASIDPKICCTV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02608 419 SUPERFAMILY Tubby C-terminal domain-like 151 418 IPR025659 -
Bva02g02608 419 MobiDBLite consensus disorder prediction 58 98 - -
Bva02g02608 419 Pfam Tub family 165 412 IPR000007 -
Bva02g02608 419 Gene3D Tubby Protein; Chain A 159 412 IPR025659 -
Bva02g02608 419 PANTHER TUBBY-LIKE PROTEIN 8 2 417 - -
Bva02g02608 419 PANTHER TUBBY-RELATED 2 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02608 Bva-Chr2 24280679 24283869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02608 58 302 TUB Transcription Factor Family AT1G16070 52.174 5.58e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva02g02608 Tub 5.1e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02608 K19600 - jre:109010979 570.466