Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02547 ATGCCAACTAGCTCGAGTACTGCTAAAGCGGGAACCTCGTCGGAAGAAGTCATCCGGCCACCGGCTATGATGGTTTCGGGCGAGCCTAGTGAGTCTTCGTCCTCCTTCTCCTCCGCCTCCTTGTCCAATTTGACCCAAgcatttcctttctcttctggAAACCCTAGAATCGAAGAGACAAGAGGCGTCATGCATCTTTATCGCGAGGATCCCGCTTCATCATCGACTTCTGATCTTCCTGTTGGGCGGAAGCCACTTGTTTGTGTCCTTGGAGTGCCAAATCATATGACGTATGCAGATTTTTGCCAGTTCTGTGCCTCATTTTTTCAGCATATTTTAGAGATGCGGATTGTCAGAAATGATGGGATGGAGGGCCAATACAGTGTTTTAATTCGGTTTGACAATCAAGAGTCCACAGACAGTTTCTACAAGCATTATAATAGACGCCGTTTCTCATCTTTGGAGGTGGAGATTTGTCGCGTTCTTTTCATCTTAGATGTGCTGTACACTGGCTCAATCGAACATGCACAAGCATCTAATACTAGTTCAACTGAACAACCTACTTGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACAAGTGGAATTCTTACCACTATATGCAATCATTCTTTCCACTGTTCCTGTATCTCAAAATGGGAAGATTCTTCTTGTCCAgtatGTCGCTATTGCCAGCAGCAAGCCGAAAAATCTATATGTTTTGTCTGCCAAACCACTGAGAACCTCTGGATATGTGTTATCTGTGGGTTTGTTGGCTGTGGAAGGTATAAAGGAGGACATGCTATAATACACTGGAGAGAAACACAGCATTGCTATTCCCTAGAAGTTGATACACAACGTGTGTGGGATTATGTGGGAGACAACTATGTACACAGACTAATCCAGACCAAAACTGATGGAAAGTTGGTGGAGTTGAATTCGCACTGTGTGCATGCTGACAAGGGGTGTGGAAGTTGCAACTGTGAGGACACTGCCATGAGTGAGGCTATACTGAACAGTAAAGTTGAAGCTaTTGTCAATGAATACAATGAACTGCTTGCTAGTCAActtgaaaaccaaaaattaTACTTTGAGTCCATTCTACAAGAAGTAAACGAAGAAACTCAGAGAGAAATTTCTAATGCTGTTGAGAAGGCAGTCGTTCTTAAACTGCAGAAGATGCAGTCTAAGGTTGATAGATGTgttaaagagaagaaatttctTGATGATCTCAATGAGAATCTTCTGAAAAATCAGGAGATTTGGACAGCAAAGTTACATGACATTGAAGAGAGGGAGAAAAAAGCCTCAAAACTGAAGgatgataaaataaaggagCTAGAAGAGCAGCTTAGGGAGCTGATGCTTTGTCTTGAAGCTGGGAAGACTACAGAAGTAGAGCATCTATCAGATTCGAATGAAATTAAAGATTG 1433 0.4075 MPTSSSTAKAGTSSEEVIRPPAMMVSGEPSESSSSFSSASLSNLTQAFPFSSGNPRIEETRGVMHLYREDPASSSTSDLPVGRKPLVCVLGVPNHMTYADFCQFCASFFQHILEMRIVRNDGMEGQYSVLIRFDNQESTDSFYKHYNRRRFSSLEVEICRVLFILDVLYTGSIEHAQASNTSSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWEDSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWRETQHCYSLEVDTQRVWDYVGDNYVHRLIQTKTDGKLVELNSHCVHADKGCGSCNCEDTAMSEAILNSKVEAIVNEYNELLASQLENQKLYFESILQEVNEETQREISNAVEKAVVLKLQKMQSKVDRCVKEKKFLDDLNENLLKNQEIWTAKLHDIEEREKKASKLKDDKIKELEEQLRELMLCLEAGKTTEVEHLSDSNEIKD 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02547 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 230 IPR013083 -
Bva02g02547 477 SUPERFAMILY RING/U-box 205 304 - -
Bva02g02547 477 ProSiteProfiles Zinc finger UBP-type profile. 223 316 IPR001607 GO:0008270
Bva02g02547 477 MobiDBLite consensus disorder prediction 1 38 - -
Bva02g02547 477 Pfam Zn-finger in ubiquitin-hydrolases and other protein 240 299 IPR001607 GO:0008270
Bva02g02547 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 314 IPR013083 -
Bva02g02547 477 SMART ring_2 189 228 IPR001841 -
Bva02g02547 477 ProSiteProfiles Zinc finger RING-type profile. 189 229 IPR001841 -
Bva02g02547 477 SMART Zf_UBP_1 239 288 IPR001607 GO:0008270
Bva02g02547 477 Coils Coil 474 477 - -
Bva02g02547 477 Pfam Ring finger domain 188 229 IPR001841 -
Bva02g02547 477 Pfam BRCA1-associated protein 2 80 176 IPR011422 -
Bva02g02547 477 CDD RING-H2_BRAP2 187 230 - -
Bva02g02547 477 CDD RRM_BRAP2_like 87 167 - -
Bva02g02547 477 PANTHER BRCA1-ASSOCIATED PROTEIN 29 471 - -
Bva02g02547 477 Coils Coil 412 464 - -
Bva02g02547 477 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02547 Bva-Chr2 23992988 23996651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02547 185 229 C3H Transcription Factor Family AT1G72220 48.936 4.30e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02547 K10632 - qsu:112004506 743.806