LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva02g02535	ATGGAAGAAGATGACGATTATATGGAGTATGTGCCGGTCGCCAAGCGTAGGGCTATGGAAGCGCAGAAGATTCTTCAGCGGAAAGGTAAGTCGGCTTCCGCCGTCGACGATGATTTGGAGAAATCCACAGTTGCCGAAGCAAAACCCAGTCTTCTAGTTAAGGCCTCACAGCTGAAACGCGACCAACCCGAGATCAGTCCTACGGAGCAGATTGTTCAACAGGAGAAGGAGATGATTGAGAACTTATCAGATCGAAAAACCCTTATGTCTGTTCGTGAATTGGCTAAAGGAATCACTTACTCAGAGCCTTTGCTTACTGGGTGGAAACCTCCTTTGAATGTGAGAAGAATGTCTAAAAAGGAATGTGATTTGATTCGGAAACAATGGCATATAATTGTTGACGGTGATGATATCCCACACCCTATTAAGAATTTCAAGGACATGAGGTTTCCTGAGCCAATTTTAAAGATGTTGAAAGCTAAGGGGATTGTGCAGCCAACACCCATTCAGGTTCAAGGTCTTCCGGTTATCCTATCTGGGAGGGACATGATTGGAATTGCATTCACCGGTTCTGGGAAAACACTGGTTTTTGTGTTACCAATGATCATGATAGCATTGCAGGAGGAAATAATGATGCCTCTTGTTCCAGGAGAAGGTCCATTTGGTTTGGTAATTTGCCCTTCAAGGGAACTGGCTAGGCAGACTTATGAAGTGGTTGAACAGTTCTTGATACCCTTAAGAGAAGCTGGGTATCCAGAGCTTAGGCCTTTGCTTTGTATAGGTGGAGTTGATATGAGAGGGCAGCTAGAGATTGTGAAGAAAGGTGTTCATATTGTTGTTGCCACTCCTGGCAGGTTGAAGGATATgttagcaaagaaaaaaatgaacctCGATAATTGTAGGTATTTGACATTAGATGAGGCTGATAGATTGGTAGATTTGGGATTTGAAGATGATATTAGAGAAGTGTTTGATCATTTCAAAGCTCAAAGGCAAACTCTCTTGTTCTCTGCCACTATGCCAACCAAAATCCAGAATTTTGCTAGAAGTGCCCTGGTGAAGCCTGTTATTGTCAATGTGGGACGGGCAGGTGCAGCAAATCTTGATGTGATCCAGGAGGTGGAGTATGTTAAGCAAGAGGCGAAAATCGTTTATCTACTCGAATGCCTGCAGAAAACCCCACCTCCTGTTTTGGTATTCTGTGAGAACAAGGCGGATGTGGATGACATTCATGAGTATCTTCTCTTGAAAGGTGTAGAAGCAGTGGCTGTTCATGGAGGCAAGGAtcaggaagagagagaatacGCCATTGCAGCTTTTAAGTCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTATGATATGCCTgcggaaattgaaaattatgtcCATAGGATTGGACGAACTGGAAGATGTGGCAAGACAGGCATTGCGACAACATTTATAAACAAGAATCAGAGCGAGACAACATTACTTGATTTGAAACATCTCTTGCAAGAAGCAAAACAGAGGGTTCCCCCTGTCTTGGCTGAGCTGAATGATCCAATGGAAGATGTTGATGCAATCACAAACGCGAGTGGGGTCAAGGGTTGTGCATATTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTCCCAAATTAGAGCATCAGAAGAGCATGGCAATTGCTAATTCCCGAAGAGATTATTTTGGGTCTGGCGGTTACAGAGGGGAAATTTG	1766	0.4236	MEEDDDYMEYVPVAKRRAMEAQKILQRKGKSASAVDDDLEKSTVAEAKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYSEPLLTGWKPPLNVRRMSKKECDLIRKQWHIIVDGDDIPHPIKNFKDMRFPEPILKMLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMIALQEEIMMPLVPGEGPFGLVICPSRELARQTYEVVEQFLIPLREAGYPELRPLLCIGGVDMRGQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLVFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIAAFKSGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRVPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANSRRDYFGSGGYRGEI	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva02g02535	588	Gene3D	-	368	530	IPR027417	-
	Bva02g02535	588	PANTHER	BNAA06G38640D PROTEIN	8	568	-	-
	Bva02g02535	588	ProSiteProfiles	Zinc finger CCHC-type profile.	547	562	IPR001878	GO:0003676\|GO:0008270
	Bva02g02535	588	Coils	Coil	500	520	-	-
	Bva02g02535	588	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	143	171	IPR014014	GO:0003724
	Bva02g02535	588	CDD	SF2_C_DEAD	370	498	-	-
	Bva02g02535	588	Pfam	Helicase conserved C-terminal domain	382	489	IPR001650	-
	Bva02g02535	588	SMART	ultradead3	162	373	IPR014001	-
	Bva02g02535	588	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	8	568	-	-
	Bva02g02535	588	SMART	helicmild6	408	489	IPR001650	-
	Bva02g02535	588	SMART	c2hcfinal6	546	562	IPR001878	GO:0003676\|GO:0008270
	Bva02g02535	588	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	369	529	IPR001650	-
	Bva02g02535	588	Pfam	Zinc knuckle	546	562	IPR001878	GO:0003676\|GO:0008270
	Bva02g02535	588	SUPERFAMILY	Retrovirus zinc finger-like domains	546	567	IPR036875	GO:0003676\|GO:0008270
	Bva02g02535	588	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	174	358	IPR014001	-
	Bva02g02535	588	Pfam	DEAD/DEAH box helicase	167	346	IPR011545	GO:0003676\|GO:0005524
	Bva02g02535	588	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	219	504	IPR027417	-
	Bva02g02535	588	CDD	DEADc_DDX41	154	359	IPR044113	GO:0000398\|GO:0003724\|GO:0005524
	Bva02g02535	588	Gene3D	-	110	362	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva02g02535	Bva-Chr2	23936816	23938957	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva02g02535	112	524	Eukaryotic Initiation Factors Gene Family	AT3G13920	30.456	7.26e-58	198

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva02g02535	K13116		-	gmx:100819984	1107.43

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva02g02535	02	23936816	23938957	Bva02g02535	02	23936816	23938957	ECH