Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02482 ATGGCTGATTCTGCATCTGGGCACCAATTTTACACTGCTCCCTTTGGTTATGGTGCTCAAAGGCATTTCCTTCCATCTCAGTTTCCCcctaaagataaagaaattgaagtttcGTCTGACATTGAAAACTCACCTTTCAAGAAACCCAGAATTTCAGGTACACTTTCAAATCCTGGGATGCAACTTCTGTTAAACAACGCAAGGACCCGTTATTTCAAAACCCAACTCTGCCGAAATTTCAGATTGGGTCAATGTAACTATGGGTCCAGATGTAAATACGCCCATGGAATCAGAGAACTTGAAAGGCAAGGAGTTGTCATAGGGGCAAATCCATTGGCTGGAACTTCTTATAGtgataaaaaattctcaaaaccaCGTAGAATGTTCTCTGATGCAAGAAGGTCCACAGATACAGTTGAAGACCGTTGCCATTTCCTTGCTCCAAGGACTAATAACATGAATTCGAGAGAGGTTTCAATGGAAAAAATGACTGATATTGGACTTACCGAGCATTACAAAGATGGGTCTGGTCAATCAGAATGCGAGAAGGTTTTCAGTGACAGCTTTGATACTGAAGTGAATCGAAAGGAAGTACTGCTGAAAACTCGGTTGTGCCATAAATGGAACATGAAAAGGCAATGCCCATATGGAAACAATTGTCGCTTTGCTCATGGACTATCAGAGATCCGGAAGCTTGATGGCTACTCTTCTGCAAAACACAGAGTGATGCTAACTTCTACTGCTACTACAAATGCATCAACTGCTATGGTGGCAAATGACTCTTTGCCTAAGGAGGAATTGTACGGAACGAAGTGCATCTTCAAGAGAAATGCGCTGCAGAAAATCAGCGGCATCTATGCTGATTGGATTGAAGACGTTCATGCCTTTCCTAGGGAAGTGTGCTA 905 0.4088 MADSASGHQFYTAPFGYGAQRHFLPSQFPPKDKEIEVSSDIENSPFKKPRISGTLSNPGMQLLLNNARTRYFKTQLCRNFRLGQCNYGSRCKYAHGIRELERQGVVIGANPLAGTSYSDKKFSKPRRMFSDARRSTDTVEDRCHFLAPRTNNMNSREVSMEKMTDIGLTEHYKDGSGQSECEKVFSDSFDTEVNRKEVLLKTRLCHKWNMKRQCPYGNNCRFAHGLSEIRKLDGYSSAKHRVMLTSTATTNASTAMVANDSLPKEELYGTKCIFKRNALQKISGIYADWIEDVHAFPREVC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02482 301 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 293 IPR045877 GO:0003729
Bva02g02482 301 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Bva02g02482 301 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Bva02g02482 301 Gene3D - 194 231 - -
Bva02g02482 301 Gene3D - 65 103 - -
Bva02g02482 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 201 225 IPR000571 GO:0046872
Bva02g02482 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 96 IPR000571 GO:0046872
Bva02g02482 301 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 22 293 - -
Bva02g02482 301 SUPERFAMILY CCCH zinc finger 70 101 IPR036855 GO:0046872
Bva02g02482 301 SUPERFAMILY CCCH zinc finger 199 230 IPR036855 GO:0046872
Bva02g02482 301 SMART c3hfinal6 71 97 IPR000571 GO:0046872
Bva02g02482 301 SMART c3hfinal6 199 226 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02482 199 275 C3H Transcription Factor Family AT1G68200 33.766 8.83e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva02g02482 zf-CCCH 1.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02482 - - vvi:104880257 132.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02482 02 23711359 23713858 Bva02g02482 02 23711359 23713858 ECH