Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02443 ATGGATGTTACCTCTCTAGGACCAAATAGCAATACTCAAACTGATCAATATCCTTTGCTGATGGAGCAACTGGAAAGCTATAATGACCATCAGCACGTAGTTGATATTTCAAGGAATTCTGATGCTTTATCCAGCTTATCTCATGATGATCAACATCCTGAAATGCATTTATCGCAGAATGTAGATCAACCGTCCAGTGGCACAATAGTTTCTGTTCATCAAGCATCTTCCTCGTCCTCATCCATATTAAATACTAGAAATCCCTCTTCAGCAAGAAGAGGTGAGGGGTATGGTCATCGCCGAAGGAGCCCACTGAATTCTGGACTATGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATTGTTGTCTTGTCATTATCCAGGAATGAAAATCCACAAGCTCCATTGTTTGAATGGATTATGGGTTATGCATCTGGTTGTGTTGCTACTCTTCCTATTCTATACTGGCGTTACCAAAACCGTAATCAAAACATTGAACAAGATATCTCTCAACCATCTCAAGGGTCTTCTGGAAGTAATCCTTCAGAACCTACTTCTTATACAGCCATCTCCGTTGCTCATTTCTCAGATGAGGAGATTAGTAGTGCTACTGAATCAACTGCAAGAAACACTAGGATCCCTGGAGCTTTTAGTTCTAgGGTCAATGGATTAGTAGAACATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAATGTATGGATCTTTGGAGGTCACTCTTCTCCTTCTGATGCTCCAAAATTATATAGGTTGTGTATAGTGTTTCTTACCTTTAGCTGCATTGGATATGCTATGCCTTTTATATTATGTGCAACTATTTGTTGCTGTCTACCTTGCCTAATCTCTGTCCTGGGTATCCGGGaggatttttctcaaaatagaGGAGCGACAGTAGAATCTATTAATGCTCTGCCAACCTACAAGttcaaattgaagaaaaatgaaaacgtAGATGGTCATGATATCAATACAGCTGTAGATGAAGGTGGGATCTTGGCTGCAGGGACGGAAAAGGAGCGGACCATATCAGGAGAAGATGCTGCTTGCTGCATTTGCTTGGCAAAATATGTAGACAATGATGAGCTTAAGGAGTTACCCTGTTTTCATGTCTTTCACGTAGTGTGTGTCGACAAATGGTTAAAGATAAATGCATCCTGTCCTCTTTGTAAAAGTGAAGTTGGGAACAGCAGTGGGGTGTCATCTTCAGAGAGGGACTCCAGTCAGCATTA 1280 0.4008 MDVTSLGPNSNTQTDQYPLLMEQLESYNDHQHVVDISRNSDALSSLSHDDQHPEMHLSQNVDQPSSGTIVSVHQASSSSSSILNTRNPSSARRGEGYGHRRRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFEWIMGYASGCVATLPILYWRYQNRNQNIEQDISQPSQGSSGSNPSEPTSYTAISVAHFSDEEISSATESTARNTRIPGAFSSRVNGLVEHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCLISVLGIREDFSQNRGATVESINALPTYKFKLKKNENVDGHDINTAVDEGGILAAGTEKERTISGEDAACCICLAKYVDNDELKELPCFHVFHVVCVDKWLKINASCPLCKSEVGNSSGVSSSERDSSQH 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02443 426 MobiDBLite consensus disorder prediction 57 91 - -
Bva02g02443 426 SMART ring_2 366 406 IPR001841 -
Bva02g02443 426 ProSiteProfiles Zinc finger RING-type profile. 366 407 IPR001841 -
Bva02g02443 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 415 IPR013083 -
Bva02g02443 426 PANTHER PROTEIN, PUTATIVE-RELATED 1 422 - -
Bva02g02443 426 Pfam Ring finger domain 365 407 IPR001841 -
Bva02g02443 426 SUPERFAMILY RING/U-box 359 413 - -
Bva02g02443 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 422 - -
Bva02g02443 426 MobiDBLite consensus disorder prediction 43 102 - -
Bva02g02443 426 CDD RING-H2_RNF111_like 366 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02443 Bva-Chr2 23518929 23524072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02443 1 418 C3H Transcription Factor Family AT1G80400 57.482 4.20e-170 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02443 - - gmx:100819516 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02443 02 23518929 23524072 Bva02g02443 02 23518929 23524072 ECH