LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva02g02390	ATGAGCGGTACATTTAAAGTTTTCAACAAACAAGTCAGGCTACTTTACTTCCATAAACGCTCCACAGCTCATTGTGGTTTCATAAATCCTCCTCTCGGTCTCTTTCTACATCCTAAATACCCCAGTTTTTGCTTCTCGGTATCTCGGCCATACTCCTCATTTCCTTCTGCTACATTTATGGAAGTGGTCAAAGCAGTTGCCAAACAAGGACTTTCAAGTCCTGACAGTGTTGCTATCAGAGCTGATCAGAAAAGTTACAGTTACATTCAGCTTATCTTGTCTGCACAGAAGATATCTAATCTTTTATGTAGCAGCAATGTGAAAACAGGACATCTTGGTGGAGCTCGAATAGGAATTGTGGCCAAACCTTCTGCTGAGTTTGTTGCTGGGATACTGGGGACTTGGTTTAGTGGAGGTGTTGGTGTGCCTCTTGCACTCAGCTATCCAGAAGCGGAGCTCTTGCATGTGATAAATAATTCGGATGTCTCAGTCATACTGAGTACTGGAGATCATGATGAACTAATGCAAAATCTTGCCAATAAAAGCTCTgctcaattttttcatattcccCCTGTTCCTAGTAAGTCTTTGGAGAAAGGTGGAGATGAAATTTCTCAAGTTAGAGAAATTGACGCAGACAGAATTTTTCAGGGTAGTAGTGAAATACCAAGTGAGGATCCGGCATTGATTTTGTATACTAGTGGGACAACAGGTAAACCAAAGGGAGTTGTTCACACACATAGAAGCATCACTGCCCAGGTCGAAACTTTGGCAAAAGCGTGGGAGTACACATTTACTGATCAATTTCTGCATTGCTTGCCTCTACACCATATCCAAGAAAGTTTTCATGTGTATTTTATTAGTGGTTATATGATTATGTTAAGCTTATTATCTCCTTTAGTTGTGAGGGGAATATGGCAGAGATGGCGTGAATCTTATCCAGCTAAAGGAACCAAGTCCGATGATGCTATAACTGTATTTACTGGAGTTCCAACAATGTATACCCGATTGATACAAGGTTACCAAGCAATGGATCCTGAGCTGCAAGCTGCTTCAGCATCTGCTGCAAGGAACTTGCGTCTTATGATGTGTGGATCTTCTGCACTTCCTCAACCTGTTATGCAAGAATGGGAGGCCATCACTGGGCATCGGTTGTTGGAGCGGTATGGCATGACTGAATTTGTCATGGCATTATCAAATCCTTTGAAAGGTGAGCGGAAAGCAGGCACGGTTGGCAAACCTTTTCCTGGCGTGCAGGTCAAGATTCTTGCTGATGAGGAGAGTGGAAGTGATACAACTACAGTGGGTGAACTTTGCGTTAAAAGCCCTTCATTGTTTAAAGAATATTGGAAACTTCCTGAGGTAACACAGGAATCATTTATTGATGATGGTTTCTTTAAGACTGGAGATGCAGTTACTACGGATGAAGATGGATATTATATCATTCTGGGACGTACTAACGCTGATATAATGAAGGTCGGTGGCTATAAACTGTCTGCGTTAGAAATTGAATCAGTCATATTAGAGCATCCTGCTGTCTCCGAATGCTGTGTGTTAGGCTTACCTGACAAAGATTACGGAGAAGTCGTTTCTGCAATTATTGTGCCAGAGGTTGAAGCTAAAAGAAAAGCGGATGAAGAGTCAAAACCTGCTATAAGCTTAGAAGAATTATCCAGCTGGGCAAAACACAGATTGGCGCCTTACAAGATACCAACTCGACTATTCCTGTGGGATTCACTCCCTCGCAATGCCATGGGCAAGGTTAACAAGAAAGAGTTGAAGAAATCACTGGCTACAGAACAGTG	1805	0.4183	MSGTFKVFNKQVRLLYFHKRSTAHCGFINPPLGLFLHPKYPSFCFSVSRPYSSFPSATFMEVVKAVAKQGLSSPDSVAIRADQKSYSYIQLILSAQKISNLLCSSNVKTGHLGGARIGIVAKPSAEFVAGILGTWFSGGVGVPLALSYPEAELLHVINNSDVSVILSTGDHDELMQNLANKSSAQFFHIPPVPSKSLEKGGDEISQVREIDADRIFQGSSEIPSEDPALILYTSGTTGKPKGVVHTHRSITAQVETLAKAWEYTFTDQFLHCLPLHHIQESFHVYFISGYMIMLSLLSPLVVRGIWQRWRESYPAKGTKSDDAITVFTGVPTMYTRLIQGYQAMDPELQAASASAARNLRLMMCGSSALPQPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKAGTVGKPFPGVQVKILADEESGSDTTTVGELCVKSPSLFKEYWKLPEVTQESFIDDGFFKTGDAVTTDEDGYYIILGRTNADIMKVGGYKLSALEIESVILEHPAVSECCVLGLPDKDYGEVVSAIIVPEVEAKRKADEESKPAISLEELSSWAKHRLAPYKIPTRLFLWDSLPRNAMGKVNKKELKKSLATEQ	601

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva02g02390	601	Pfam	AMP-binding enzyme C-terminal domain	502	587	IPR025110	-
Bva02g02390	601	SUPERFAMILY	Acetyl-CoA synthetase-like	49	597	-	-
Bva02g02390	601	Gene3D	-	63	485	IPR042099	-
Bva02g02390	601	Gene3D	-	488	601	IPR045851	-
Bva02g02390	601	PANTHER	MALONATE--COA LIGASE-LIKE	35	600	-	-
Bva02g02390	601	ProSitePatterns	Putative AMP-binding domain signature.	230	241	IPR020845	-
Bva02g02390	601	Pfam	AMP-binding enzyme	71	492	IPR000873	-
Bva02g02390	601	CDD	MCS	75	595	-	-
Bva02g02390	601	PANTHER	ACYL-COA SYNTHETASE	35	600	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva02g02390	Bva-Chr2	23277008	23283194	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva02g02390	222	599	Monolignol Biosynthesis Gene Families	AT4G19010	29.049	5.25e-39	149

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva02g02390	K18660		-	gmx:100813324	875.93

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva02g02390	02	23277008	23283194	Bva02g02390	02	23277008	23283194	ECH

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