Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02372 ATGTTATTGATAACTGCTGGAGAATGGCGTAGGCACCGCCCTCAACTTGCCACCTGCTTTGTGGGCTATGCAGGGAAGATGACAAATAATGTTGGCAAAGACCTCATCCACTACAAAGTCACTGACCCTATTAACCCAAAACCAGGCACCTTGAGATACGCCGCAAGCGTGATTCAATGCATAGTATGGATCACATTCCAAAGAGACATTGATGGCCGAGGTGTCAACGTTCACATTGCTCATAATGCATGCTTCATGATTTTAAGAGAGAAGAACAAGGTTATGCTTCTTGGCCAGGATGATGGCTTCGTCAGGGACCAGAACATGAAGGTCACCGTTGTCAAAAACTATTTTGGACCAAATTGCGGCCAGCGCATGCCAAGTGTAAAGCCAAATTATAACATGGAACAGATGTTTAAAGTTGCAGAAGCCAAAAATGTAAGGCCATTGACAAGGTCAGTAGGTGCATTACGATGCAGTAAAACCTCAAGATGCTG 497 0.4467 MLLITAGEWRRHRPQLATCFVGYAGKMTNNVGKDLIHYKVTDPINPKPGTLRYAASVIQCIVWITFQRDIDGRGVNVHIAHNACFMILREKNKVMLLGQDDGFVRDQNMKVTVVKNYFGPNCGQRMPSVKPNYNMEQMFKVAEAKNVRPLTRSVGALRCSKTSRC 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02372 165 Gene3D - 73 141 IPR012334 -
Bva02g02372 165 SUPERFAMILY Pectin lyase-like 77 133 IPR011050 -
Bva02g02372 165 PANTHER PECTATE LYASE 18-RELATED 88 133 IPR045032 GO:0030570
Bva02g02372 165 PANTHER PECTATE LYASE 18-RELATED 7 88 IPR045032 GO:0030570
Bva02g02372 165 PANTHER PECTATE LYASE 88 133 - -
Bva02g02372 165 PANTHER PECTATE LYASE 7 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02372 Bva-Chr2 23189209 23190275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02372 27 95 Polysaccharide Lyase AT5G09280 40.449 3.15e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02372 K01728 - gmx:100780437 134.035