Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02330 ATGGATAACATGAGCTGGGATGACTCACAACTAGTAGCAAACATGCCGATGATCTCATGGAGCACTCAGCAACATGATCTTGAAGCGGGCTATCAAATGCCGGCAGAGATACAGAAGGCTAGAAATTTGAGAGACATGGTTCAGTCAACAGCTACAACTTCAGAGATAATGAATGtgatgccaagcataaatctTTCACAGCCAGCAGCTGCCTTGGTGGCGAAATCAGGAGCAGCCACTAATTGGGGAGAATGTTTAAAATCCCAATCATGCCAGTCCCTTTCCGCAAATGGACCTTACAGTGTGAACCCAGTTAGTAATTTTGTGCCAGATTTCAACATGGCCCACCAACAACAACTTGCCAATGGCTCATCTGAAAATGACAAGGCTACCTGCTCTCTGGAGTCACTAGATTATTGCTTGCTCTCAGCTACTAACAGCAACACAGACACTTCTGCAGAAGATGATGGCATCTCAATGATTTTATCTGACTGCAGAAACTTGTGGAACTTCAGTTATGGCAGCAGCACTGCAGTTTCCTCCGGTGAATCTGAGAGCAATGCTTCTAATGGTAGAAACAAAGACATGCAGTATGGAGTTAACGAACTTGATGAAACAGTTTCTCAAAGTTCTTCAGATCGACATGCCAATCAAGGTAAATTTGTAGAACTAAAGACTAATGGTACAAAAAGGAGTAATGATCAATCTGAGCTTGTCAAACTCGATGCTGGTGATCCATACTTTACCATTATTCAGAATTCTTCTGCTACTGAAGGTGGCTTTAGGCTTATTTCGGACAATCCaccaaaatccaaaaaacCCAGATGGGAAAAGCGTCCTACCTCATCGAATATCAACTTTCAGCAGCCAAATTCATCTTTGTCATCTTCCAATGTTGAAGAACCTGATCCAGAGGCCATAGCACACATGAAGGAGATGATATATAGGGCTGCAGCTTTCAGGCCAGTGAACTTAGGCTTGGAGGTGGTGGAAAAGCCTAAGAGGAAGAATGTCAGGATATCAACAGATCCTCAAACAGTGGCTGCAAGGCAAAGGAGGGAAAGAATAAGTGAGAGAATTAGGGTTTTGCAGAAGCTAGTGCCTGGTGGAAGCAAGATGGACACAGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTCAAAGCACTGGAAAGTGTAGGGAACAAGCTTGACTCAATGAATGTTCCTCCTTCTAGCATTGCCTTCTCCTTCAACCCGTCTTTTCCCATGCAAACCCATTTCCCAATCCAAAACCCTAACCACATCCATCACTCCAGTTG 1319 0.4291 MDNMSWDDSQLVANMPMISWSTQQHDLEAGYQMPAEIQKARNLRDMVQSTATTSEIMNVMPSINLSQPAAALVAKSGAATNWGECLKSQSCQSLSANGPYSVNPVSNFVPDFNMAHQQQLANGSSENDKATCSLESLDYCLLSATNSNTDTSAEDDGISMILSDCRNLWNFSYGSSTAVSSGESESNASNGRNKDMQYGVNELDETVSQSSSDRHANQGKFVELKTNGTKRSNDQSELVKLDAGDPYFTIIQNSSATEGGFRLISDNPPKSKKPRWEKRPTSSNINFQQPNSSLSSSNVEEPDPEAIAHMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESVGNKLDSMNVPPSSIAFSFNPSFPMQTHFPIQNPNHIHHSS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02330 439 SMART finulus 346 395 IPR011598 GO:0046983
Bva02g02330 439 Coils Coil 379 399 - -
Bva02g02330 439 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 14 438 IPR045843 GO:0003700|GO:0006355
Bva02g02330 439 MobiDBLite consensus disorder prediction 280 300 - -
Bva02g02330 439 Gene3D - 345 408 IPR036638 GO:0046983
Bva02g02330 439 MobiDBLite consensus disorder prediction 205 238 - -
Bva02g02330 439 MobiDBLite consensus disorder prediction 259 302 - -
Bva02g02330 439 PANTHER TRANSCRIPTION FACTOR BHLH87 14 438 - -
Bva02g02330 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 406 IPR036638 GO:0046983
Bva02g02330 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 389 IPR011598 GO:0046983
Bva02g02330 439 MobiDBLite consensus disorder prediction 205 234 - -
Bva02g02330 439 Pfam Helix-loop-helix DNA-binding domain 350 389 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02330 Bva-Chr2 22940787 22942106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02330 70 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.187 1.52e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva02g02330 HLH 9.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02330 - - vra:106773034 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02173 08 14287759 14289081 Bva02g02330 02 22940787 22942106 BWGD
Bva02g02330 02 22940787 22942106 Bva02g02330 02 22940787 22942106 ECH