LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva02g02297	ATGAGTCGCTACGATAGTCGCTCCGGTGACCCCACTTCTTACCGTGACCGGAGGAGCGATTCGGGACTAGGTGCACCTACAGGGTATGGTGGCTCCGTAAATTCTTCCTCAAGCAGAAGGGATTATGATGATCCTGGGTCGCCGAGGAAAGTGAGCTTGGATGGGTTGCCTCGTTTTGAGAAGAATTTCTACAATGAATCACCAAGCGTGAAGGCAATGACAGAGGCAGAGGTTAATGAGTATCGGCAGCGGAGGGAAATAACTGTTGAAGGCCGAGATGTCCCAAAACCTGTCAAGAGCTTTCACGATGTTGGTTTTCCAGAATATGTTCtacaagaaatttcaaaggCTGGCTTTGTTGAACCTACACCTATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGTCGTGATCTCATAGGCATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTATTGCCTGCAATAGTTCATGTTAATGCCCAGCCAATTCTTGATCCTGGAGATGGTCCCATTGTTTTAGTTTTGGCTCCAACCCGTGAACTTGCTGTCCAAATACAACAGGAGGCTACTAAATTTGGTTCATCATCCAGGATTAAGAGTACATGCATTTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCCACTCCAGGAAGGTTGATTGACATGATTGAGTCAAATCATACAAATTTGCGCAGGGTCACATACCTTGTATTGGATGAGGCTGATAGAATGTTAGACATGGGATTTGATCCTCAAATAAGGAAGATTGTCTCTCAGATTCGTCCTGATCGGCAAACTTTGTACTGGAGTGCTACCTGGCCAAAGGAAGTTGAACAACTGGCAAGACAGTTTCTTTATAATGCATACAAAGTTATTATAGGATCTCCAGATTTGAAAGCTAACCATGCCATCCGGCAATATGTTGATGTTGTTTCTGAAAAACAGAAATATGATAAATTGGTGAAATTGCTGGAGGACATCATGGATGGCAGTCGAATACTGATATTCATGGATACCAAGAAAGGATGTGATCAAATTACTCGCCAGCTTCGGATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGGGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCCATAATGACCGCAACAGATGTTGCTGCTCGTGGTTTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCAGGATCTCTCGAGGATTATGTTCATCGCATTGGTAGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCTAGATTTGCGAAGGAACTTATAACCATACTTGTGGAGGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCTATGGGACGTGGTGCTCCTCCTCCACCTTCAGGTTATGGAGGTTTTCGGGACCGCGGGAAAGGTTATGGCAGCGGCCGCCCATGGAGCTG	1517	0.4483	MSRYDSRSGDPTSYRDRRSDSGLGAPTGYGGSVNSSSSRRDYDDPGSPRKVSLDGLPRFEKNFYNESPSVKAMTEAEVNEYRQRREITVEGRDVPKPVKSFHDVGFPEYVLQEISKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGSSSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNAYKVIIGSPDLKANHAIRQYVDVVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILVEAGQKVSPELAAMGRGAPPPPSGYGGFRDRGKGYGSGRPWS	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva02g02297	505	Pfam	Helicase conserved C-terminal domain	330	439	IPR001650	-
	Bva02g02297	505	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	130	305	IPR014001	-
	Bva02g02297	505	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	54	490	-	-
	Bva02g02297	505	Gene3D	-	311	476	IPR027417	-
	Bva02g02297	505	SMART	ultradead3	118	321	IPR014001	-
	Bva02g02297	505	CDD	SF2_C_DEAD	318	448	-	-
	Bva02g02297	505	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	333	478	IPR001650	-
	Bva02g02297	505	Pfam	DEAD/DEAH box helicase	123	294	IPR011545	GO:0003676\|GO:0005524
	Bva02g02297	505	MobiDBLite	consensus disorder prediction	478	505	-	-
	Bva02g02297	505	SMART	helicmild6	358	439	IPR001650	-
	Bva02g02297	505	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	99	127	IPR014014	GO:0003724
	Bva02g02297	505	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	251	259	IPR000629	-
	Bva02g02297	505	Gene3D	-	62	309	IPR027417	-
	Bva02g02297	505	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	171	455	IPR027417	-
	Bva02g02297	505	PANTHER	LD32873P	54	490	-	-
	Bva02g02297	505	MobiDBLite	consensus disorder prediction	1	54	-	-
	Bva02g02297	505	MobiDBLite	consensus disorder prediction	1	17	-	-
	Bva02g02297	505	CDD	DEADc_DDX5_DDX17	110	305	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva02g02297	Bva-Chr2	22757678	22763171	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva02g02297	86	459	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.933	3.79e-77	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva02g02297	K12823		-	gmx:100790464	938.717