Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02279 ATGGTTTCCTATCATGATGCAGGAATTCTGATAGTAGGAGCACTAGTAATTGCACTCATATTTTTTGGTCTTACCATGCTTGGATGTTGCACTTGTATTCGCACATCATCTCTTCCGACAGCACAAGTTGATGACAAGATTTCTGGTTGTAAGAGTTATCTCGAGTCTCATTCGTTGACATTCCTGTATAAGAAAGCAGCAGGAGGGAGTGTAGAAGGTACTGACCAGACTGAGTGTAGTATCTGCTTGACAGCCTTTGAAGAAGATGACTGCGTGCGACAGCTTAGCAGTTGCAAACACATGTTCCATAAAGTTTGCATAGATCAGTGGCTTAGCTTTCATTCTGGATGCCCAATTTGCCGTACTAAGATTGACAAAGTGGATCCTCCACCAAATGGAACAGTGATTTCAGAAGGTAGTGGCCAGATGACCTCGGTCATTGTTGGCTCCTG 452 0.4358 MVSYHDAGILIVGALVIALIFFGLTMLGCCTCIRTSSLPTAQVDDKISGCKSYLESHSLTFLYKKAAGGSVEGTDQTECSICLTAFEEDDCVRQLSSCKHMFHKVCIDQWLSFHSGCPICRTKIDKVDPPPNGTVISEGSGQMTSVIVGS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02279 150 SUPERFAMILY RING/U-box 78 128 - -
Bva02g02279 150 SMART ring_2 79 120 IPR001841 -
Bva02g02279 150 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 47 136 IPR044675 -
Bva02g02279 150 Pfam Ring finger domain 78 121 IPR001841 -
Bva02g02279 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 129 IPR013083 -
Bva02g02279 150 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 47 136 - -
Bva02g02279 150 ProSiteProfiles Zinc finger RING-type profile. 79 121 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02279 Bva-Chr2 22642837 22643289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02279 9 150 C3H Transcription Factor Family AT5G17600 33.544 6.44e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02279 - - gmx:102661636 145.976