Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02273 ATGTTCTTGGTAGCATCTGATGTCCAACAATTGTCTGCATCCAAAAGTTTGTGCTGGAAAATGGGCGTTCTGCCACAACAATCTAATAACTCCaagcaattaaattttcaatttcaagatCAAGATTCATCTTCAGCTCAATCGACTGGGCAATCTTATCCTGAAATGGGTTCAGCACACTCAGGTCAAATTTGTGTACAGTGTAGCAATTCTTCTGCTCATTCGATATGTAACAGAACTAGGGACAAGCCTGTGGGAGGCCTCATCAAGTCATCCGCTGAGAATCAGGATCTtgcttttcctctttctcagTTGgatcatattaaatcaattGCTAATACATCGTTCCATCAGGCTGAACCATATTTTGGTAGTTTTCTGGCTGCTGCATATGGACCACAGTCTAACATTCATCATGCCCAACTGATGGGAATGGCTCCACTTCGAGTTCCACTTCAGCTTGATTTCGCAGAAGAACCCATATACGTGAATGCCAAACAGTACCATGCTATTCTAAGGCGTAGACAGTATCGTGCAAAACTCGAAGCACAGAAAAAACTCCTCAAAGTTCGAAAACCATATCTTCACGAGTCTCGGCATCTCCATGCATTAAAGAGGGCTAGAGGTTCCGGGGGCCGTTTTCTCAACACCAAAAACCTCCAACAATCAAATCAGACTTCAACAAGCCATGGCTTAGATGGTTCTAGCTGCACCCAGTTGAATCTGAGTGGAAATATATCAGAATCTAAAGTTAATCTGGtagaaaactataaaaatggTGCTTCCGCTGCCTCCTTCTCTGATGTCACCAGTGATGGAATCTTCCACAAACAGCAAGTGGACTTAAGGTTCTCTGGTTACTCTTCTCATATTGGAAGGAATATCCGAGGTTACTCGGCTGATGTGGGCGGCGGCGGCAGCAGCAGCGGCAGTCAGCCGCGTGTATCTCTCCTCACGTG 959 0.4213 MFLVASDVQQLSASKSLCWKMGVLPQQSNNSKQLNFQFQDQDSSSAQSTGQSYPEMGSAHSGQICVQCSNSSAHSICNRTRDKPVGGLIKSSAENQDLAFPLSQLDHIKSIANTSFHQAEPYFGSFLAAAYGPQSNIHHAQLMGMAPLRVPLQLDFAEEPIYVNAKQYHAILRRRQYRAKLEAQKKLLKVRKPYLHESRHLHALKRARGSGGRFLNTKNLQQSNQTSTSHGLDGSSCTQLNLSGNISESKVNLVENYKNGASAASFSDVTSDGIFHKQQVDLRFSGYSSHIGRNIRGYSADVGGGGSSSGSQPRVSLLT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02273 319 ProSitePatterns NF-YA/HAP2 subunit signature. 162 182 IPR018362 GO:0003677|GO:0016602
Bva02g02273 319 ProSiteProfiles NF-YA/HAP2 family profile. 157 217 IPR001289 GO:0003700|GO:0006355
Bva02g02273 319 Gene3D - 157 219 - -
Bva02g02273 319 SMART cbf3 156 217 IPR001289 GO:0003700|GO:0006355
Bva02g02273 319 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 159 214 IPR001289 GO:0003700|GO:0006355
Bva02g02273 319 MobiDBLite consensus disorder prediction 214 234 - -
Bva02g02273 319 MobiDBLite consensus disorder prediction 299 319 - -
Bva02g02273 319 MobiDBLite consensus disorder prediction 212 234 - -
Bva02g02273 319 MobiDBLite consensus disorder prediction 304 319 - -
Bva02g02273 319 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 9 289 - -
Bva02g02273 319 PRINTS CCAAT-binding transcription factor subunit B signature 160 182 IPR001289 GO:0003700|GO:0006355
Bva02g02273 319 PRINTS CCAAT-binding transcription factor subunit B signature 191 214 IPR001289 GO:0003700|GO:0006355
Bva02g02273 319 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 9 289 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02273 Bva-Chr2 22591895 22595993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02273 32 224 CCAAT-HAP2 Transcription Factor Family AT3G14020 47.291 2.78e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bva02g02273 CBFB_NFYA 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02273 K08064 - gmx:100500765 377.096